|
SRA STUDY
|
|
SRA Study Id
|
SRP072679
(Link to NCBI )
|
|
Study Title
|
Female Urinary Microbiota Genome Sequencing
|
|
SRA Experiments
|
| SRA Experiment Id |
SRX3104388
(Link to NCBI ) |
| Experiment Title |
WGS of Lactobacillus iners str. UMB0030: urinary microbiota |
| Exp Library Strategy |
WGS |
| Library Source |
GENOMIC |
| Library Selection |
RANDOM |
| Library Name |
Lactobacillus_iners_(16933_8_35) |
| Library Layout |
PAIRED |
| Library Instrument |
ILLUMINA_HI_SEQ_2000 |
| |
|
| SRA Experiment Id |
SRX3104389
(Link to NCBI ) |
| Experiment Title |
WGS of Lactobacillus vaginalis str. UMB0388: urinary microbiota |
| Exp Library Strategy |
WGS |
| Library Source |
GENOMIC |
| Library Selection |
RANDOM |
| Library Name |
Lactobacillus_vaginalis_(17957_1_28) |
| Library Layout |
PAIRED |
| Library Instrument |
ILLUMINA_HI_SEQ_2000 |
| |
|
| SRA Experiment Id |
SRX3104382
(Link to NCBI ) |
| Experiment Title |
WGS of Corynebacterium kroppenstedtii str. UMB0869: urinary microbiota |
| Exp Library Strategy |
WGS |
| Library Source |
GENOMIC |
| Library Selection |
RANDOM |
| Library Name |
Corynebacterium_kroppenstedtii_(17957_1_38) |
| Library Layout |
PAIRED |
| Library Instrument |
ILLUMINA_HI_SEQ_2000 |
| |
|
| SRA Experiment Id |
SRX3104383
(Link to NCBI ) |
| Experiment Title |
WGS of Lactobacillus iners str. UMB1051: urinary microbiota |
| Exp Library Strategy |
WGS |
| Library Source |
GENOMIC |
| Library Selection |
RANDOM |
| Library Name |
Lactobacillus_iners_(21837_8_56) |
| Library Layout |
PAIRED |
| Library Instrument |
ILLUMINA_HI_SEQ_2000 |
| |
|
| SRA Experiment Id |
SRX3104380
(Link to NCBI ) |
| Experiment Title |
WGS of Brevibacterium luteolum str. UMB0680: urinary microbiota |
| Exp Library Strategy |
WGS |
| Library Source |
GENOMIC |
| Library Selection |
RANDOM |
| Library Name |
Brevibacterium_luteolum_(17957_1_84) |
| Library Layout |
PAIRED |
| Library Instrument |
ILLUMINA_HI_SEQ_2000 |
| |
|
| SRA Experiment Id |
SRX3104381
(Link to NCBI ) |
| Experiment Title |
WGS of Corynebacterium tuscaniense str. UMB0792: urinary microbiota |
| Exp Library Strategy |
WGS |
| Library Source |
GENOMIC |
| Library Selection |
RANDOM |
| Library Name |
Corynebacterium_tuscaniense_(21837_8_95) |
| Library Layout |
PAIRED |
| Library Instrument |
ILLUMINA_HI_SEQ_2000 |
| |
|
| SRA Experiment Id |
SRX1842889
(Link to NCBI ) |
| Experiment Title |
Lactobacillus crispatus OAB24-B |
| Exp Library Strategy |
WGS |
| Library Source |
GENOMIC |
| Library Selection |
RANDOM |
| Library Name |
L. crispatus OAB24-B |
| Library Layout |
PAIRED |
| Library Instrument |
ILLUMINA_MI_SEQ |
| |
|
| SRA Experiment Id |
SRX3104386
(Link to NCBI ) |
| Experiment Title |
WGS of Haemophilus parainfluenzae str. UMB0748: urinary microbiota |
| Exp Library Strategy |
WGS |
| Library Source |
GENOMIC |
| Library Selection |
RANDOM |
| Library Name |
Haemophilus_parainfluenzae_(16933_8_15) |
| Library Layout |
PAIRED |
| Library Instrument |
ILLUMINA_HI_SEQ_2000 |
| |
|
| SRA Experiment Id |
SRX3104387
(Link to NCBI ) |
| Experiment Title |
WGS of Gemella sanguinis str. UMB0186: urinary microbiota |
| Exp Library Strategy |
WGS |
| Library Source |
GENOMIC |
| Library Selection |
RANDOM |
| Library Name |
Gemella_sanguinis_(17957_1_3) |
| Library Layout |
PAIRED |
| Library Instrument |
ILLUMINA_HI_SEQ_2000 |
| |
|
| SRA Experiment Id |
SRX3104384
(Link to NCBI ) |
| Experiment Title |
WGS of Lactobacillus iners str. UMB0033: urinary microbiota |
| Exp Library Strategy |
WGS |
| Library Source |
GENOMIC |
| Library Selection |
RANDOM |
| Library Name |
Lactobacillus_iners_(17957_1_33) |
| Library Layout |
PAIRED |
| Library Instrument |
ILLUMINA_HI_SEQ_2000 |
| |
|
| SRA Experiment Id |
SRX3104385
(Link to NCBI ) |
| Experiment Title |
WGS of Gemella haemolysans str. UMB1385: urinary microbiota |
| Exp Library Strategy |
WGS |
| Library Source |
GENOMIC |
| Library Selection |
RANDOM |
| Library Name |
Gemella_haemolysans_(17957_1_71) |
| Library Layout |
PAIRED |
| Library Instrument |
ILLUMINA_HI_SEQ_2000 |
| |
|
| SRA Experiment Id |
SRX1688198
(Link to NCBI ) |
| Experiment Title |
Gardnerella vaginalis 23-12 |
| Exp Library Strategy |
WGS |
| Library Source |
GENOMIC |
| Library Selection |
RANDOM |
| Library Name |
G. vaginalis 23-12 |
| Library Layout |
PAIRED |
| Library Instrument |
ILLUMINA_MI_SEQ |
| |
|
| SRA Experiment Id |
SRX1926166
(Link to NCBI ) |
| Experiment Title |
Nosocomiicoccus ampullae str. LUREC |
| Exp Library Strategy |
WGS |
| Library Source |
GENOMIC |
| Library Selection |
RANDOM |
| Library Layout |
PAIRED |
| Library Instrument |
ILLUMINA_MI_SEQ |
| |
|
| SRA Experiment Id |
SRX3104357
(Link to NCBI ) |
| Experiment Title |
WGS of Aerococcus urinae str. UMB0080: urinary microbiota |
| Exp Library Strategy |
WGS |
| Library Source |
GENOMIC |
| Library Selection |
RANDOM |
| Library Name |
Aerococcus_urinae_(17957_1_2) |
| Library Layout |
PAIRED |
| Library Instrument |
ILLUMINA_HI_SEQ_2000 |
| |
|
| SRA Experiment Id |
SRX3104358
(Link to NCBI ) |
| Experiment Title |
WGS of Aerococcus urinae str. UMB0088: urinary microbiota |
| Exp Library Strategy |
WGS |
| Library Source |
GENOMIC |
| Library Selection |
RANDOM |
| Library Name |
Aerococcus_urinae_(16933_8_23) |
| Library Layout |
PAIRED |
| Library Instrument |
ILLUMINA_HI_SEQ_2000 |
| |
|
| SRA Experiment Id |
SRX3104399
(Link to NCBI ) |
| Experiment Title |
WGS of Gardnerella vaginalis str. UMB0663: urinary microbiota |
| Exp Library Strategy |
WGS |
| Library Source |
GENOMIC |
| Library Selection |
RANDOM |
| Library Name |
Gardnerella_vaginalis_(21837_8_42) |
| Library Layout |
PAIRED |
| Library Instrument |
ILLUMINA_HI_SEQ_2000 |
| |
|
| SRA Experiment Id |
SRX3104359
(Link to NCBI ) |
| Experiment Title |
WGS of Actinomyces neuii str. UMB0918: urinary microbiota |
| Exp Library Strategy |
WGS |
| Library Source |
GENOMIC |
| Library Selection |
RANDOM |
| Library Name |
Actinomyces_neuii_(17957_1_7) |
| Library Layout |
PAIRED |
| Library Instrument |
ILLUMINA_HI_SEQ_2000 |
| |
|
| SRA Experiment Id |
SRX3104393
(Link to NCBI ) |
| Experiment Title |
WGS of Nosocomiicoccus massiliensis str. UMB0959: urinary microbiota |
| Exp Library Strategy |
WGS |
| Library Source |
GENOMIC |
| Library Selection |
RANDOM |
| Library Name |
Nosocomiicoccus_massiliensis_(17957_1_23) |
| Library Layout |
PAIRED |
| Library Instrument |
ILLUMINA_HI_SEQ_2000 |
| |
|
| SRA Experiment Id |
SRX3104394
(Link to NCBI ) |
| Experiment Title |
WGS of Oligella urethralis str. UMB0345: urinary microbiota |
| Exp Library Strategy |
WGS |
| Library Source |
GENOMIC |
| Library Selection |
RANDOM |
| Library Name |
Oligella_urethralis_(21837_8_92) |
| Library Layout |
PAIRED |
| Library Instrument |
ILLUMINA_HI_SEQ_2000 |
| |
|
| SRA Experiment Id |
SRX3104391
(Link to NCBI ) |
| Experiment Title |
WGS of Micrococcus luteus str. UMB0189 (biological replicate): urinary microbiota |
| Exp Library Strategy |
WGS |
| Library Source |
GENOMIC |
| Library Selection |
RANDOM |
| Library Name |
Micrococcus_luteus_(17957_1_19) |
| Library Layout |
PAIRED |
| Library Instrument |
ILLUMINA_HI_SEQ_2000 |
| |
|
| SRA Experiment Id |
SRX3104392
(Link to NCBI ) |
| Experiment Title |
WGS of Lactobacillus gasseri str. UMB0056: urinary microbiota |
| Exp Library Strategy |
WGS |
| Library Source |
GENOMIC |
| Library Selection |
RANDOM |
| Library Name |
Lactobacillus_gasseri_(21837_8_94) |
| Library Layout |
PAIRED |
| Library Instrument |
ILLUMINA_HI_SEQ_2000 |
| |
|
| SRA Experiment Id |
SRX3104397
(Link to NCBI ) |
| Experiment Title |
WGS of Staphylococcus aureus str. UMB0910: urinary microbiota |
| Exp Library Strategy |
WGS |
| Library Source |
GENOMIC |
| Library Selection |
RANDOM |
| Library Name |
Staphylococcus_aureus_(16933_8_3) |
| Library Layout |
PAIRED |
| Library Instrument |
ILLUMINA_HI_SEQ_2000 |
| |
|
| SRA Experiment Id |
SRX3104398
(Link to NCBI ) |
| Experiment Title |
WGS of Gardnerella vaginalis str. UMB1642: urinary microbiota |
| Exp Library Strategy |
WGS |
| Library Source |
GENOMIC |
| Library Selection |
RANDOM |
| Library Name |
Gardnerella_vaginalis_(21837_8_65) |
| Library Layout |
PAIRED |
| Library Instrument |
ILLUMINA_HI_SEQ_2000 |
| |
|
| SRA Experiment Id |
SRX3104395
(Link to NCBI ) |
| Experiment Title |
WGS of Prevotella buccalis str. UMB0536: urinary microbiota |
| Exp Library Strategy |
WGS |
| Library Source |
GENOMIC |
| Library Selection |
RANDOM |
| Library Name |
Prevotella_buccalis_(16933_8_22) |
| Library Layout |
PAIRED |
| Library Instrument |
ILLUMINA_HI_SEQ_2000 |
| |
|
| SRA Experiment Id |
SRX3104396
(Link to NCBI ) |
| Experiment Title |
WGS of Prevotella timonensis str. UMB0818: urinary microbiota |
| Exp Library Strategy |
WGS |
| Library Source |
GENOMIC |
| Library Selection |
RANDOM |
| Library Name |
Prevotella_timonensis_(17957_1_85) |
| Library Layout |
PAIRED |
| Library Instrument |
ILLUMINA_HI_SEQ_2000 |
| |
|
| SRA Experiment Id |
SRX3104390
(Link to NCBI ) |
| Experiment Title |
WGS of Micrococcus luteus str. UMB0189: urinary microbiota |
| Exp Library Strategy |
WGS |
| Library Source |
GENOMIC |
| Library Selection |
RANDOM |
| Library Name |
Micrococcus_luteus_(16933_1_36) |
| Library Layout |
PAIRED |
| Library Instrument |
ILLUMINA_HI_SEQ_2000 |
| |
|
| SRA Experiment Id |
SRX3104401
(Link to NCBI ) |
| Experiment Title |
WGS of Gardnerella vaginalis str. UMB0264: urinary microbiota |
| Exp Library Strategy |
WGS |
| Library Source |
GENOMIC |
| Library Selection |
RANDOM |
| Library Name |
Gardnerella_vaginalis_(16933_8_45) |
| Library Layout |
PAIRED |
| Library Instrument |
ILLUMINA_HI_SEQ_2000 |
| |
|
| SRA Experiment Id |
SRX3155954
(Link to NCBI ) |
| Experiment Title |
WGS of Lactobacillus pontis str. UMB0683: urinary microbiota |
| Exp Library Strategy |
WGS |
| Library Source |
GENOMIC |
| Library Selection |
RANDOM |
| Library Name |
Lactobacillus_pontis_(21837_8_53) |
| Library Layout |
PAIRED |
| Library Instrument |
ILLUMINA_HI_SEQ_2000 |
| |
|
| SRA Experiment Id |
SRX3104368
(Link to NCBI ) |
| Experiment Title |
WGS of Varibaculum cambriense str. UMB0744: urinary microbiota |
| Exp Library Strategy |
WGS |
| Library Source |
GENOMIC |
| Library Selection |
RANDOM |
| Library Name |
Varibaculum_cambriense_(17957_1_21) |
| Library Layout |
PAIRED |
| Library Instrument |
ILLUMINA_HI_SEQ_2000 |
| |
|
| SRA Experiment Id |
SRX3155953
(Link to NCBI ) |
| Experiment Title |
WGS of Streptococcus dentisani str. UMB0079: urinary microbiota |
| Exp Library Strategy |
WGS |
| Library Source |
GENOMIC |
| Library Selection |
RANDOM |
| Library Name |
Streptococcus_dentisani_(17957_1_87) |
| Library Layout |
PAIRED |
| Library Instrument |
ILLUMINA_HI_SEQ_2000 |
| |
|
| SRA Experiment Id |
SRX3104402
(Link to NCBI ) |
| Experiment Title |
WGS of Finegoldia magna str. UMB0115: urinary microbiota |
| Exp Library Strategy |
WGS |
| Library Source |
GENOMIC |
| Library Selection |
RANDOM |
| Library Name |
Finegoldia_magna_(17957_1_34) |
| Library Layout |
PAIRED |
| Library Instrument |
ILLUMINA_HI_SEQ_2000 |
| |
|
| SRA Experiment Id |
SRX3104369
(Link to NCBI ) |
| Experiment Title |
WGS of Streptococcus dentisani str. UMB0029: urinary microbiota |
| Exp Library Strategy |
WGS |
| Library Source |
GENOMIC |
| Library Selection |
RANDOM |
| Library Name |
Streptococcus_dentisani_(17957_1_25) |
| Library Layout |
PAIRED |
| Library Instrument |
ILLUMINA_HI_SEQ_2000 |
| |
|
| SRA Experiment Id |
SRX3104366
(Link to NCBI ) |
| Experiment Title |
WGS of Anaerococcus hydrogenalis str. UMB0204: urinary microbiota |
| Exp Library Strategy |
WGS |
| Library Source |
GENOMIC |
| Library Selection |
RANDOM |
| Library Name |
Anaerococcus_hydrogenalis_(17957_1_27) |
| Library Layout |
PAIRED |
| Library Instrument |
ILLUMINA_HI_SEQ_2000 |
| |
|
| SRA Experiment Id |
SRX3104400
(Link to NCBI ) |
| Experiment Title |
WGS of Gardnerella vaginalis str. UMB0170: urinary microbiota |
| Exp Library Strategy |
WGS |
| Library Source |
GENOMIC |
| Library Selection |
RANDOM |
| Library Name |
Gardnerella_vaginalis_(16933_8_28) |
| Library Layout |
PAIRED |
| Library Instrument |
ILLUMINA_HI_SEQ_2000 |
| |
|
| SRA Experiment Id |
SRX3104367
(Link to NCBI ) |
| Experiment Title |
WGS of Aerococcus viridans str. UMB0240: urinary microbiota |
| Exp Library Strategy |
WGS |
| Library Source |
GENOMIC |
| Library Selection |
RANDOM |
| Library Name |
Aerococcus_viridans_(17957_1_67) |
| Library Layout |
PAIRED |
| Library Instrument |
ILLUMINA_HI_SEQ_2000 |
| |
|
| SRA Experiment Id |
SRX3155955
(Link to NCBI ) |
| Experiment Title |
WGS of Nosocomiicoccus massiliensis str. UMB0959: urinary microbiota |
| Exp Library Strategy |
WGS |
| Library Source |
GENOMIC |
| Library Selection |
RANDOM |
| Library Name |
Nosocomiicoccus_massiliensis_(17957_2_23) |
| Library Layout |
PAIRED |
| Library Instrument |
ILLUMINA_HI_SEQ_2000 |
| |
|
| SRA Experiment Id |
SRX3104405
(Link to NCBI ) |
| Experiment Title |
WGS of Enterobacter aerogenes str. UMB0295: urinary microbiota |
| Exp Library Strategy |
WGS |
| Library Source |
GENOMIC |
| Library Selection |
RANDOM |
| Library Name |
Enterobacter_aerogenes_(17957_1_48) |
| Library Layout |
PAIRED |
| Library Instrument |
ILLUMINA_HI_SEQ_2000 |
| |
|
| SRA Experiment Id |
SRX1688291
(Link to NCBI ) |
| Experiment Title |
Gardnerella vaginalis 18-4 |
| Exp Library Strategy |
WGS |
| Library Source |
GENOMIC |
| Library Selection |
RANDOM |
| Library Name |
G. vaginalis 18-4 |
| Library Layout |
PAIRED |
| Library Instrument |
ILLUMINA_MI_SEQ |
| |
|
| SRA Experiment Id |
SRX3104406
(Link to NCBI ) |
| Experiment Title |
WGS of Corynebacterium xerosis str. UMB0908: urinary microbiota |
| Exp Library Strategy |
WGS |
| Library Source |
GENOMIC |
| Library Selection |
RANDOM |
| Library Name |
Corynebacterium_xerosis_(17957_1_86) |
| Library Layout |
PAIRED |
| Library Instrument |
ILLUMINA_HI_SEQ_2000 |
| |
|
| SRA Experiment Id |
SRX3104403
(Link to NCBI ) |
| Experiment Title |
WGS of Fusobacterium nucleatum str. UMB0249: urinary microbiota |
| Exp Library Strategy |
WGS |
| Library Source |
GENOMIC |
| Library Selection |
RANDOM |
| Library Name |
Fusobacterium_nucleatum_(16933_8_42) |
| Library Layout |
PAIRED |
| Library Instrument |
ILLUMINA_HI_SEQ_2000 |
| |
|
| SRA Experiment Id |
SRX3104404
(Link to NCBI ) |
| Experiment Title |
WGS of Dolosicoccus paucivorans str. UMB0860: urinary microbiota |
| Exp Library Strategy |
WGS |
| Library Source |
GENOMIC |
| Library Selection |
RANDOM |
| Library Name |
Dolosicoccus_paucivorans_(17957_1_30) |
| Library Layout |
PAIRED |
| Library Instrument |
ILLUMINA_HI_SEQ_2000 |
| |
|
| SRA Experiment Id |
SRX3104360
(Link to NCBI ) |
| Experiment Title |
WGS of Actinomyces hominis str. UMB0859: urinary microbiota |
| Exp Library Strategy |
WGS |
| Library Source |
GENOMIC |
| Library Selection |
RANDOM |
| Library Name |
Actinomyces_hominis_(17957_1_22) |
| Library Layout |
PAIRED |
| Library Instrument |
ILLUMINA_HI_SEQ_2000 |
| |
|
| SRA Experiment Id |
SRX3104361
(Link to NCBI ) |
| Experiment Title |
WGS of Actinomyces graevenitzii str. UMB0286: urinary microbiota |
| Exp Library Strategy |
WGS |
| Library Source |
GENOMIC |
| Library Selection |
RANDOM |
| Library Name |
Actinomyces_graevenitzii_(17957_1_83) |
| Library Layout |
PAIRED |
| Library Instrument |
ILLUMINA_HI_SEQ_2000 |
| |
|
| SRA Experiment Id |
SRX3104364
(Link to NCBI ) |
| Experiment Title |
WGS of Acinetobacter septicus str. UMB1319: urinary microbiota |
| Exp Library Strategy |
WGS |
| Library Source |
GENOMIC |
| Library Selection |
RANDOM |
| Library Name |
Acinetobacter_septicus_(17957_1_8) |
| Library Layout |
PAIRED |
| Library Instrument |
ILLUMINA_HI_SEQ_2000 |
| |
|
| SRA Experiment Id |
SRX3104365
(Link to NCBI ) |
| Experiment Title |
WGS of Streptococcus agalactiae str. UMB0776 (maybe 908? Or 870?): urinary microbiota |
| Exp Library Strategy |
WGS |
| Library Source |
GENOMIC |
| Library Selection |
RANDOM |
| Library Name |
Streptococcus_agalactiae_(17957_1_61) |
| Library Layout |
PAIRED |
| Library Instrument |
ILLUMINA_HI_SEQ_2000 |
| |
|
| SRA Experiment Id |
SRX3104362
(Link to NCBI ) |
| Experiment Title |
WGS of Actinomyces europaeus str. UMB0652: urinary microbiota |
| Exp Library Strategy |
WGS |
| Library Source |
GENOMIC |
| Library Selection |
RANDOM |
| Library Name |
Actinomyces_europaeus_(17957_1_76) |
| Library Layout |
PAIRED |
| Library Instrument |
ILLUMINA_HI_SEQ_2000 |
| |
|
| SRA Experiment Id |
SRX3104363
(Link to NCBI ) |
| Experiment Title |
WGS of Actinobaculum urinale str. UMB0759: urinary microbiota |
| Exp Library Strategy |
WGS |
| Library Source |
GENOMIC |
| Library Selection |
RANDOM |
| Library Name |
Actinobaculum_urinale_(17957_1_37) |
| Library Layout |
PAIRED |
| Library Instrument |
ILLUMINA_HI_SEQ_2000 |
| |
|
| SRA Experiment Id |
SRX3914949
(Link to NCBI ) |
| Experiment Title |
A. urinae UMB1016 |
| Exp Library Strategy |
WGS |
| Library Source |
GENOMIC |
| Library Selection |
RANDOM |
| Library Name |
Aurinae_UMB1016 |
| Library Layout |
PAIRED |
| Library Instrument |
ILLUMINA_MI_SEQ |
| |
|
| SRA Experiment Id |
SRX3914948
(Link to NCBI ) |
| Experiment Title |
A. urinae UMB0337 |
| Exp Library Strategy |
WGS |
| Library Source |
GENOMIC |
| Library Selection |
RANDOM |
| Library Name |
Aurinae_UMB0337 |
| Library Layout |
PAIRED |
| Library Instrument |
ILLUMINA_MI_SEQ |
| |
|
| SRA Experiment Id |
SRX3914947
(Link to NCBI ) |
| Experiment Title |
A. urinae UMB2354 |
| Exp Library Strategy |
WGS |
| Library Source |
GENOMIC |
| Library Selection |
RANDOM |
| Library Name |
Aurinae_UMB2354 |
| Library Layout |
PAIRED |
| Library Instrument |
ILLUMINA_MI_SEQ |
| |
|
| SRA Experiment Id |
SRX3914946
(Link to NCBI ) |
| Experiment Title |
A. urinae UMB2879 |
| Exp Library Strategy |
WGS |
| Library Source |
GENOMIC |
| Library Selection |
RANDOM |
| Library Name |
Aurinae_UMB2879 |
| Library Layout |
PAIRED |
| Library Instrument |
ILLUMINA_MI_SEQ |
| |
|
| SRA Experiment Id |
SRX3914945
(Link to NCBI ) |
| Experiment Title |
A. urinae UMB0071 |
| Exp Library Strategy |
WGS |
| Library Source |
GENOMIC |
| Library Selection |
RANDOM |
| Library Name |
Aurinae_UMB0071 |
| Library Layout |
PAIRED |
| Library Instrument |
ILLUMINA_MI_SEQ |
| |
|
| SRA Experiment Id |
SRX3914944
(Link to NCBI ) |
| Experiment Title |
A. urinae UMB2325 |
| Exp Library Strategy |
WGS |
| Library Source |
GENOMIC |
| Library Selection |
RANDOM |
| Library Name |
Aurinae_UMB2325 |
| Library Layout |
PAIRED |
| Library Instrument |
ILLUMINA_MI_SEQ |
| |
|
| SRA Experiment Id |
SRX3914943
(Link to NCBI ) |
| Experiment Title |
A. urinae UMB5628 |
| Exp Library Strategy |
WGS |
| Library Source |
GENOMIC |
| Library Selection |
RANDOM |
| Library Name |
Aurinae_UMB5628 |
| Library Layout |
PAIRED |
| Library Instrument |
ILLUMINA_MI_SEQ |
| |
|
| SRA Experiment Id |
SRX3914942
(Link to NCBI ) |
| Experiment Title |
A. urinae UMB6497 |
| Exp Library Strategy |
WGS |
| Library Source |
GENOMIC |
| Library Selection |
RANDOM |
| Library Name |
Aurinae_UMB6497 |
| Library Layout |
PAIRED |
| Library Instrument |
ILLUMINA_MI_SEQ |
| |
|
| SRA Experiment Id |
SRX3914941
(Link to NCBI ) |
| Experiment Title |
A. urinae UMB3440 |
| Exp Library Strategy |
WGS |
| Library Source |
GENOMIC |
| Library Selection |
RANDOM |
| Library Name |
Aurinae_UMB3440 |
| Library Layout |
PAIRED |
| Library Instrument |
ILLUMINA_MI_SEQ |
| |
|
| SRA Experiment Id |
SRX3914940
(Link to NCBI ) |
| Experiment Title |
A. urinae UMB3669 |
| Exp Library Strategy |
WGS |
| Library Source |
GENOMIC |
| Library Selection |
RANDOM |
| Library Name |
Aurinae_UMB3669 |
| Library Layout |
PAIRED |
| Library Instrument |
ILLUMINA_MI_SEQ |
| |
|
| SRA Experiment Id |
SRX3155943
(Link to NCBI ) |
| Experiment Title |
WGS of Lactobacillus gasseri str. UMB0045: urinary microbiota |
| Exp Library Strategy |
WGS |
| Library Source |
GENOMIC |
| Library Selection |
RANDOM |
| Library Name |
Lactobacillus_gasseri_(16933_8_18) |
| Library Layout |
PAIRED |
| Library Instrument |
ILLUMINA_HI_SEQ_2000 |
| |
|
| SRA Experiment Id |
SRX3104379
(Link to NCBI ) |
| Experiment Title |
WGS of Brevibacterium paucivorans str. UMB1301: urinary microbiota |
| Exp Library Strategy |
WGS |
| Library Source |
GENOMIC |
| Library Selection |
RANDOM |
| Library Name |
Brevibacterium_paucivorans_(17957_1_63) |
| Library Layout |
PAIRED |
| Library Instrument |
ILLUMINA_HI_SEQ_2000 |
| |
|
| SRA Experiment Id |
SRX3104410
(Link to NCBI ) |
| Experiment Title |
WGS of Gardnerella vaginalis str. UMB0411: urinary microbiota |
| Exp Library Strategy |
WGS |
| Library Source |
GENOMIC |
| Library Selection |
RANDOM |
| Library Name |
Gardnerella_vaginalis_(17957_1_36) |
| Library Layout |
PAIRED |
| Library Instrument |
ILLUMINA_HI_SEQ_2000 |
| |
|
| SRA Experiment Id |
SRX3104377
(Link to NCBI ) |
| Experiment Title |
WGS of Corynebacterium aurimucosum str. UMB1300: urinary microbiota |
| Exp Library Strategy |
WGS |
| Library Source |
GENOMIC |
| Library Selection |
RANDOM |
| Library Name |
Corynebacterium_aurimucosum_(17957_1_55) |
| Library Layout |
PAIRED |
| Library Instrument |
ILLUMINA_HI_SEQ_2000 |
| |
|
| SRA Experiment Id |
SRX3155945
(Link to NCBI ) |
| Experiment Title |
WGS of Brevibacterium sp. str. UMB0680: urinary microbiota |
| Exp Library Strategy |
WGS |
| Library Source |
GENOMIC |
| Library Selection |
RANDOM |
| Library Name |
Brevibacterium_luteolum_(17957_2_84) |
| Library Layout |
PAIRED |
| Library Instrument |
ILLUMINA_HI_SEQ_2000 |
| |
|
| SRA Experiment Id |
SRX3155944
(Link to NCBI ) |
| Experiment Title |
WGS of Aerococcus urinae str. UMB0072: urinary microbiota |
| Exp Library Strategy |
WGS |
| Library Source |
GENOMIC |
| Library Selection |
RANDOM |
| Library Name |
Aerococcus_urinae_(21837_8_75) |
| Library Layout |
PAIRED |
| Library Instrument |
ILLUMINA_HI_SEQ_2000 |
| |
|
| SRA Experiment Id |
SRX3104378
(Link to NCBI ) |
| Experiment Title |
WGS of Citrobacter murliniae str. UMB1094: urinary microbiota |
| Exp Library Strategy |
WGS |
| Library Source |
GENOMIC |
| Library Selection |
RANDOM |
| Library Name |
Citrobacter_murliniae_(17957_1_31) |
| Library Layout |
PAIRED |
| Library Instrument |
ILLUMINA_HI_SEQ_2000 |
| |
|
| SRA Experiment Id |
SRX3104411
(Link to NCBI ) |
| Experiment Title |
WGS of Micrococcus lylae str. UMB0955: urinary microbiota |
| Exp Library Strategy |
WGS |
| Library Source |
GENOMIC |
| Library Selection |
RANDOM |
| Library Name |
Micrococcus_lylae_(17957_1_15) |
| Library Layout |
PAIRED |
| Library Instrument |
ILLUMINA_HI_SEQ_2000 |
| |
|
| SRA Experiment Id |
SRX8019065
(Link to NCBI ) |
| Experiment Title |
WGS: Lactobacillus jensenii UMB9245 |
| Exp Library Strategy |
WGS |
| Library Source |
GENOMIC |
| Library Selection |
RANDOM |
| Library Name |
Lj_UMB9245 |
| Library Layout |
PAIRED |
| Library Instrument |
NEXT_SEQ_550 |
| |
|
| SRA Experiment Id |
SRX3155947
(Link to NCBI ) |
| Experiment Title |
WGS of Klebsiella aerogenes str. UMB0295: urinary microbiota |
| Exp Library Strategy |
WGS |
| Library Source |
GENOMIC |
| Library Selection |
RANDOM |
| Library Name |
Klebsiella_aerogenes_(17957_2_48) |
| Library Layout |
PAIRED |
| Library Instrument |
ILLUMINA_HI_SEQ_2000 |
| |
|
| SRA Experiment Id |
SRX8019060
(Link to NCBI ) |
| Experiment Title |
WGS: Lactobacillus jensenii UMB7784 |
| Exp Library Strategy |
WGS |
| Library Source |
GENOMIC |
| Library Selection |
RANDOM |
| Library Name |
Lj_UMB7784 |
| Library Layout |
PAIRED |
| Library Instrument |
NEXT_SEQ_550 |
| |
|
| SRA Experiment Id |
SRX3155946
(Link to NCBI ) |
| Experiment Title |
WGS of Dolosicoccus paucivorans str. UMB0860: urinary microbiota |
| Exp Library Strategy |
WGS |
| Library Source |
GENOMIC |
| Library Selection |
RANDOM |
| Library Name |
Dolosicoccus_paucivorans_(17957_2_30) |
| Library Layout |
PAIRED |
| Library Instrument |
ILLUMINA_HI_SEQ_2000 |
| |
|
| SRA Experiment Id |
SRX3155948
(Link to NCBI ) |
| Experiment Title |
WGS of Bacillus sp. str. UMB0899: urinary microbiota |
| Exp Library Strategy |
WGS |
| Library Source |
GENOMIC |
| Library Selection |
RANDOM |
| Library Name |
Bacillus_sp_(17957_1_62) |
| Library Layout |
PAIRED |
| Library Instrument |
ILLUMINA_HI_SEQ_2000 |
| |
|
| SRA Experiment Id |
SRX3104371
(Link to NCBI ) |
| Experiment Title |
WGS of Streptococcus agalactiae str. UMB0049: urinary microbiota |
| Exp Library Strategy |
WGS |
| Library Source |
GENOMIC |
| Library Selection |
RANDOM |
| Library Name |
Streptococcus_agalactiae_(21837_8_67) |
| Library Layout |
PAIRED |
| Library Instrument |
ILLUMINA_HI_SEQ_2000 |
| |
|
| SRA Experiment Id |
SRX3104372
(Link to NCBI ) |
| Experiment Title |
WGS of Staphylococcus pettenkoferi str. UMB0834: urinary microbiota |
| Exp Library Strategy |
WGS |
| Library Source |
GENOMIC |
| Library Selection |
RANDOM |
| Library Name |
Staphylococcus_pettenkoferi_(21837_8_69) |
| Library Layout |
PAIRED |
| Library Instrument |
ILLUMINA_HI_SEQ_2000 |
| |
|
| SRA Experiment Id |
SRX3104375
(Link to NCBI ) |
| Experiment Title |
WGS of Bacillus aryabhattai str. UMB0500: urinary microbiota |
| Exp Library Strategy |
WGS |
| Library Source |
GENOMIC |
| Library Selection |
RANDOM |
| Library Name |
Bacillus_aryabhattai_(17957_1_60) |
| Library Layout |
PAIRED |
| Library Instrument |
ILLUMINA_HI_SEQ_2000 |
| |
|
| SRA Experiment Id |
SRX3104376
(Link to NCBI ) |
| Experiment Title |
WGS of Arthrobacter cumminsii str. UMB0715: urinary microbiota |
| Exp Library Strategy |
WGS |
| Library Source |
GENOMIC |
| Library Selection |
RANDOM |
| Library Name |
Arthrobacter_albus_(17957_1_56) |
| Library Layout |
PAIRED |
| Library Instrument |
ILLUMINA_HI_SEQ_2000 |
| |
|
| SRA Experiment Id |
SRX3104373
(Link to NCBI ) |
| Experiment Title |
WGS of Brachybacterium faecium str. UMB0905: urinary microbiota |
| Exp Library Strategy |
WGS |
| Library Source |
GENOMIC |
| Library Selection |
RANDOM |
| Library Name |
Brachybacterium_faecium_(17957_1_70) |
| Library Layout |
PAIRED |
| Library Instrument |
ILLUMINA_HI_SEQ_2000 |
| |
|
| SRA Experiment Id |
SRX3104374
(Link to NCBI ) |
| Experiment Title |
WGS of Bifidobacterium breve str. UMB0089: urinary microbiota |
| Exp Library Strategy |
WGS |
| Library Source |
GENOMIC |
| Library Selection |
RANDOM |
| Library Name |
Bifidobacterium_breve_(17957_1_18) |
| Library Layout |
PAIRED |
| Library Instrument |
ILLUMINA_HI_SEQ_2000 |
| |
|
| SRA Experiment Id |
SRX3914959
(Link to NCBI ) |
| Experiment Title |
A. urinae UMB1741 |
| Exp Library Strategy |
WGS |
| Library Source |
GENOMIC |
| Library Selection |
RANDOM |
| Library Name |
Aurinae_UMB1741 |
| Library Layout |
PAIRED |
| Library Instrument |
ILLUMINA_MI_SEQ |
| |
|
| SRA Experiment Id |
SRX1686449
(Link to NCBI ) |
| Experiment Title |
Escherichia coli- E78 |
| Exp Library Strategy |
WGS |
| Library Source |
GENOMIC |
| Library Selection |
RANDOM |
| Library Name |
E.coli- E78 |
| Library Layout |
PAIRED |
| Library Instrument |
ILLUMINA_MI_SEQ |
| |
|
| SRA Experiment Id |
SRX3914958
(Link to NCBI ) |
| Experiment Title |
A. urinae UMB0239 |
| Exp Library Strategy |
WGS |
| Library Source |
GENOMIC |
| Library Selection |
RANDOM |
| Library Name |
Aurinae_UMB0239 |
| Library Layout |
PAIRED |
| Library Instrument |
ILLUMINA_MI_SEQ |
| |
|
| SRA Experiment Id |
SRX3914957
(Link to NCBI ) |
| Experiment Title |
A. urinae UMB0553 |
| Exp Library Strategy |
WGS |
| Library Source |
GENOMIC |
| Library Selection |
RANDOM |
| Library Name |
Aurinae_UMB0553 |
| Library Layout |
PAIRED |
| Library Instrument |
ILLUMINA_MI_SEQ |
| |
|
| SRA Experiment Id |
SRX3914956
(Link to NCBI ) |
| Experiment Title |
A. urinae UMB0574 |
| Exp Library Strategy |
WGS |
| Library Source |
GENOMIC |
| Library Selection |
RANDOM |
| Library Name |
Aurinae_UMB0574 |
| Library Layout |
PAIRED |
| Library Instrument |
ILLUMINA_MI_SEQ |
| |
|
| SRA Experiment Id |
SRX3914955
(Link to NCBI ) |
| Experiment Title |
A. urinae UMB0509 |
| Exp Library Strategy |
WGS |
| Library Source |
GENOMIC |
| Library Selection |
RANDOM |
| Library Name |
Aurinae_UMB0509 |
| Library Layout |
PAIRED |
| Library Instrument |
ILLUMINA_MI_SEQ |
| |
|
| SRA Experiment Id |
SRX3104409
(Link to NCBI ) |
| Experiment Title |
WGS of Gardnerella vaginalis str. UMB0768: urinary microbiota |
| Exp Library Strategy |
WGS |
| Library Source |
GENOMIC |
| Library Selection |
RANDOM |
| Library Name |
Gardnerella_vaginalis_(16933_8_63) |
| Library Layout |
PAIRED |
| Library Instrument |
ILLUMINA_HI_SEQ_2000 |
| |
|
| SRA Experiment Id |
SRX3914954
(Link to NCBI ) |
| Experiment Title |
A. urinae UMB0621 |
| Exp Library Strategy |
WGS |
| Library Source |
GENOMIC |
| Library Selection |
RANDOM |
| Library Name |
Aurinae_UMB0621 |
| Library Layout |
PAIRED |
| Library Instrument |
ILLUMINA_MI_SEQ |
| |
|
| SRA Experiment Id |
SRX3914953
(Link to NCBI ) |
| Experiment Title |
A. urinae UMB0722 |
| Exp Library Strategy |
WGS |
| Library Source |
GENOMIC |
| Library Selection |
RANDOM |
| Library Name |
Aurinae_UMB0722 |
| Library Layout |
PAIRED |
| Library Instrument |
ILLUMINA_MI_SEQ |
| |
|
| SRA Experiment Id |
SRX3104407
(Link to NCBI ) |
| Experiment Title |
WGS of Dolosicoccus paucivorans str. UMB0852: urinary microbiota |
| Exp Library Strategy |
WGS |
| Library Source |
GENOMIC |
| Library Selection |
RANDOM |
| Library Name |
Dolosicoccus_paucivorans_(17957_1_14) |
| Library Layout |
PAIRED |
| Library Instrument |
ILLUMINA_HI_SEQ_2000 |
| |
|
| SRA Experiment Id |
SRX3104408
(Link to NCBI ) |
| Experiment Title |
WGS of Gardnerella vaginalis str. UMB1686: urinary microbiota |
| Exp Library Strategy |
WGS |
| Library Source |
GENOMIC |
| Library Selection |
RANDOM |
| Library Name |
Gardnerella_vaginalis_(21837_8_73) |
| Library Layout |
PAIRED |
| Library Instrument |
ILLUMINA_HI_SEQ_2000 |
| |
|
| SRA Experiment Id |
SRX3914952
(Link to NCBI ) |
| Experiment Title |
A. urinae UMB7382 |
| Exp Library Strategy |
WGS |
| Library Source |
GENOMIC |
| Library Selection |
RANDOM |
| Library Name |
Aurinae_UMB7382 |
| Library Layout |
PAIRED |
| Library Instrument |
ILLUMINA_MI_SEQ |
| |
|
| SRA Experiment Id |
SRX1688300
(Link to NCBI ) |
| Experiment Title |
Gardnerella species 30-4 |
| SRA Submission ID |
2418683 |
| Submitter |
Evann E Hilt ([email protected]) |
| Exp Library Strategy |
WGS |
| Library Source |
GENOMIC |
| Library Selection |
RANDOM |
| Library Name |
G. species 30-4 |
| Library Layout |
PAIRED |
| Library Instrument |
Illumina MiSeq |
| Spot Length |
300 |
| |
|
| SRA Experiment Id |
SRX3155950
(Link to NCBI ) |
| Experiment Title |
WGS of Microbacterium sp. str. UMB0228: urinary microbiota |
| Exp Library Strategy |
WGS |
| Library Source |
GENOMIC |
| Library Selection |
RANDOM |
| Library Name |
Microbacterium_sp_(17957_1_51) |
| Library Layout |
PAIRED |
| Library Instrument |
ILLUMINA_HI_SEQ_2000 |
| |
|
| SRA Experiment Id |
SRX3914951
(Link to NCBI ) |
| Experiment Title |
A. urinae UMB7480 |
| Exp Library Strategy |
WGS |
| Library Source |
GENOMIC |
| Library Selection |
RANDOM |
| Library Name |
Aurinae_UMB7480 |
| Library Layout |
PAIRED |
| Library Instrument |
ILLUMINA_MI_SEQ |
| |
|
| SRA Experiment Id |
SRX3914950
(Link to NCBI ) |
| Experiment Title |
A. urinae UMB0267 |
| Exp Library Strategy |
WGS |
| Library Source |
GENOMIC |
| Library Selection |
RANDOM |
| Library Name |
Aurinae_UMB0267 |
| Library Layout |
PAIRED |
| Library Instrument |
ILLUMINA_MI_SEQ |
| |
|
| SRA Experiment Id |
SRX3155952
(Link to NCBI ) |
| Experiment Title |
WGS of Streptococcus sp. str. UMB0767: urinary microbiota |
| Exp Library Strategy |
WGS |
| Library Source |
GENOMIC |
| Library Selection |
RANDOM |
| Library Name |
Streptococcus_agalactiae_(17957_1_53) |
| Library Layout |
PAIRED |
| Library Instrument |
ILLUMINA_HI_SEQ_2000 |
| |
|
| SRA Experiment Id |
SRX1688301
(Link to NCBI ) |
| Experiment Title |
Gardnerella species 26-12 |
| Exp Library Strategy |
WGS |
| Library Source |
GENOMIC |
| Library Selection |
RANDOM |
| Library Name |
G. species 26-12 |
| Library Layout |
PAIRED |
| Library Instrument |
ILLUMINA_MI_SEQ |
| |
|
| SRA Experiment Id |
SRX1686201
(Link to NCBI ) |
| Experiment Title |
Escherichia coli- E75 |
| Exp Library Strategy |
WGS |
| Library Source |
GENOMIC |
| Library Selection |
RANDOM |
| Library Name |
E.coli-E75 |
| Library Layout |
PAIRED |
| Library Instrument |
ILLUMINA_MI_SEQ |
| |
|
| SRA Experiment Id |
SRX3155951
(Link to NCBI ) |
| Experiment Title |
WGS of Staphylococcus sp. str. UMB0328: urinary microbiota |
| Exp Library Strategy |
WGS |
| Library Source |
GENOMIC |
| Library Selection |
RANDOM |
| Library Name |
Staphylococcus_sp_(21837_8_84) |
| Library Layout |
PAIRED |
| Library Instrument |
ILLUMINA_HI_SEQ_2000 |
|
|
Study Abstract
|
Recently, bacterial communities (microbiota) have been discovered in the female bladder. Thus, the “sterile urine” paradigm is no longer valid. In an effort to provide a comprehensive view of the newly discovered female urinary microbiota (FUM), we have established an Enhanced Quantitative Urine Culture (EQUC) protocol. EQUC isolates bacteria from 75-90% of urine samples deemed ‘no growth’ by the standard clinical microbiology urine culture method. We have begun to sequence and annotate the genomes of these isolated bacteria.
|
|
Alias
|
PRJNA316969
|
|
External Id
|
BioProject=PRJNA316969
|
