SRA STUDY
SRA Study Id SRP072679  (Link to NCBI )
Study Title Female Urinary Microbiota Genome Sequencing
SRA Experiments
SRA Experiment Id SRX3104388  (Link to NCBI )
Experiment Title WGS of Lactobacillus iners str. UMB0030: urinary microbiota
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name Lactobacillus_iners_(16933_8_35)
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2000
   
SRA Experiment Id SRX3104389  (Link to NCBI )
Experiment Title WGS of Lactobacillus vaginalis str. UMB0388: urinary microbiota
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name Lactobacillus_vaginalis_(17957_1_28)
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2000
   
SRA Experiment Id SRX3104382  (Link to NCBI )
Experiment Title WGS of Corynebacterium kroppenstedtii str. UMB0869: urinary microbiota
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name Corynebacterium_kroppenstedtii_(17957_1_38)
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2000
   
SRA Experiment Id SRX3104383  (Link to NCBI )
Experiment Title WGS of Lactobacillus iners str. UMB1051: urinary microbiota
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name Lactobacillus_iners_(21837_8_56)
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2000
   
SRA Experiment Id SRX3104380  (Link to NCBI )
Experiment Title WGS of Brevibacterium luteolum str. UMB0680: urinary microbiota
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name Brevibacterium_luteolum_(17957_1_84)
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2000
   
SRA Experiment Id SRX3104381  (Link to NCBI )
Experiment Title WGS of Corynebacterium tuscaniense str. UMB0792: urinary microbiota
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name Corynebacterium_tuscaniense_(21837_8_95)
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2000
   
SRA Experiment Id SRX1842889  (Link to NCBI )
Experiment Title Lactobacillus crispatus OAB24-B
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name L. crispatus OAB24-B
Library Layout PAIRED
Library Instrument ILLUMINA_MI_SEQ
   
SRA Experiment Id SRX3104386  (Link to NCBI )
Experiment Title WGS of Haemophilus parainfluenzae str. UMB0748: urinary microbiota
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name Haemophilus_parainfluenzae_(16933_8_15)
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2000
   
SRA Experiment Id SRX3104387  (Link to NCBI )
Experiment Title WGS of Gemella sanguinis str. UMB0186: urinary microbiota
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name Gemella_sanguinis_(17957_1_3)
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2000
   
SRA Experiment Id SRX3104384  (Link to NCBI )
Experiment Title WGS of Lactobacillus iners str. UMB0033: urinary microbiota
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name Lactobacillus_iners_(17957_1_33)
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2000
   
SRA Experiment Id SRX3104385  (Link to NCBI )
Experiment Title WGS of Gemella haemolysans str. UMB1385: urinary microbiota
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name Gemella_haemolysans_(17957_1_71)
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2000
   
SRA Experiment Id SRX1688198  (Link to NCBI )
Experiment Title Gardnerella vaginalis 23-12
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name G. vaginalis 23-12
Library Layout PAIRED
Library Instrument ILLUMINA_MI_SEQ
   
SRA Experiment Id SRX1926166  (Link to NCBI )
Experiment Title Nosocomiicoccus ampullae str. LUREC
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Layout PAIRED
Library Instrument ILLUMINA_MI_SEQ
   
SRA Experiment Id SRX3104357  (Link to NCBI )
Experiment Title WGS of Aerococcus urinae str. UMB0080: urinary microbiota
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name Aerococcus_urinae_(17957_1_2)
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2000
   
SRA Experiment Id SRX3104358  (Link to NCBI )
Experiment Title WGS of Aerococcus urinae str. UMB0088: urinary microbiota
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name Aerococcus_urinae_(16933_8_23)
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2000
   
SRA Experiment Id SRX3104399  (Link to NCBI )
Experiment Title WGS of Gardnerella vaginalis str. UMB0663: urinary microbiota
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name Gardnerella_vaginalis_(21837_8_42)
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2000
   
SRA Experiment Id SRX3104359  (Link to NCBI )
Experiment Title WGS of Actinomyces neuii str. UMB0918: urinary microbiota
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name Actinomyces_neuii_(17957_1_7)
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2000
   
SRA Experiment Id SRX3104393  (Link to NCBI )
Experiment Title WGS of Nosocomiicoccus massiliensis str. UMB0959: urinary microbiota
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name Nosocomiicoccus_massiliensis_(17957_1_23)
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2000
   
SRA Experiment Id SRX3104394  (Link to NCBI )
Experiment Title WGS of Oligella urethralis str. UMB0345: urinary microbiota
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name Oligella_urethralis_(21837_8_92)
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2000
   
SRA Experiment Id SRX3104391  (Link to NCBI )
Experiment Title WGS of Micrococcus luteus str. UMB0189 (biological replicate): urinary microbiota
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name Micrococcus_luteus_(17957_1_19)
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2000
   
SRA Experiment Id SRX3104392  (Link to NCBI )
Experiment Title WGS of Lactobacillus gasseri str. UMB0056: urinary microbiota
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name Lactobacillus_gasseri_(21837_8_94)
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2000
   
SRA Experiment Id SRX3104397  (Link to NCBI )
Experiment Title WGS of Staphylococcus aureus str. UMB0910: urinary microbiota
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name Staphylococcus_aureus_(16933_8_3)
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2000
   
SRA Experiment Id SRX3104398  (Link to NCBI )
Experiment Title WGS of Gardnerella vaginalis str. UMB1642: urinary microbiota
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name Gardnerella_vaginalis_(21837_8_65)
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2000
   
SRA Experiment Id SRX3104395  (Link to NCBI )
Experiment Title WGS of Prevotella buccalis str. UMB0536: urinary microbiota
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name Prevotella_buccalis_(16933_8_22)
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2000
   
SRA Experiment Id SRX3104396  (Link to NCBI )
Experiment Title WGS of Prevotella timonensis str. UMB0818: urinary microbiota
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name Prevotella_timonensis_(17957_1_85)
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2000
   
SRA Experiment Id SRX3104390  (Link to NCBI )
Experiment Title WGS of Micrococcus luteus str. UMB0189: urinary microbiota
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name Micrococcus_luteus_(16933_1_36)
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2000
   
SRA Experiment Id SRX3104401  (Link to NCBI )
Experiment Title WGS of Gardnerella vaginalis str. UMB0264: urinary microbiota
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name Gardnerella_vaginalis_(16933_8_45)
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2000
   
SRA Experiment Id SRX3155954  (Link to NCBI )
Experiment Title WGS of Lactobacillus pontis str. UMB0683: urinary microbiota
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name Lactobacillus_pontis_(21837_8_53)
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2000
   
SRA Experiment Id SRX3104368  (Link to NCBI )
Experiment Title WGS of Varibaculum cambriense str. UMB0744: urinary microbiota
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name Varibaculum_cambriense_(17957_1_21)
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2000
   
SRA Experiment Id SRX3155953  (Link to NCBI )
Experiment Title WGS of Streptococcus dentisani str. UMB0079: urinary microbiota
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name Streptococcus_dentisani_(17957_1_87)
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2000
   
SRA Experiment Id SRX3104402  (Link to NCBI )
Experiment Title WGS of Finegoldia magna str. UMB0115: urinary microbiota
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name Finegoldia_magna_(17957_1_34)
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2000
   
SRA Experiment Id SRX3104369  (Link to NCBI )
Experiment Title WGS of Streptococcus dentisani str. UMB0029: urinary microbiota
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name Streptococcus_dentisani_(17957_1_25)
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2000
   
SRA Experiment Id SRX3104366  (Link to NCBI )
Experiment Title WGS of Anaerococcus hydrogenalis str. UMB0204: urinary microbiota
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name Anaerococcus_hydrogenalis_(17957_1_27)
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2000
   
SRA Experiment Id SRX3104400  (Link to NCBI )
Experiment Title WGS of Gardnerella vaginalis str. UMB0170: urinary microbiota
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name Gardnerella_vaginalis_(16933_8_28)
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2000
   
SRA Experiment Id SRX3104367  (Link to NCBI )
Experiment Title WGS of Aerococcus viridans str. UMB0240: urinary microbiota
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name Aerococcus_viridans_(17957_1_67)
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2000
   
SRA Experiment Id SRX3155955  (Link to NCBI )
Experiment Title WGS of Nosocomiicoccus massiliensis str. UMB0959: urinary microbiota
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name Nosocomiicoccus_massiliensis_(17957_2_23)
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2000
   
SRA Experiment Id SRX3104405  (Link to NCBI )
Experiment Title WGS of Enterobacter aerogenes str. UMB0295: urinary microbiota
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name Enterobacter_aerogenes_(17957_1_48)
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2000
   
SRA Experiment Id SRX1688291  (Link to NCBI )
Experiment Title Gardnerella vaginalis 18-4
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name G. vaginalis 18-4
Library Layout PAIRED
Library Instrument ILLUMINA_MI_SEQ
   
SRA Experiment Id SRX3104406  (Link to NCBI )
Experiment Title WGS of Corynebacterium xerosis str. UMB0908: urinary microbiota
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name Corynebacterium_xerosis_(17957_1_86)
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2000
   
SRA Experiment Id SRX3104403  (Link to NCBI )
Experiment Title WGS of Fusobacterium nucleatum str. UMB0249: urinary microbiota
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name Fusobacterium_nucleatum_(16933_8_42)
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2000
   
SRA Experiment Id SRX3104404  (Link to NCBI )
Experiment Title WGS of Dolosicoccus paucivorans str. UMB0860: urinary microbiota
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name Dolosicoccus_paucivorans_(17957_1_30)
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2000
   
SRA Experiment Id SRX3104360  (Link to NCBI )
Experiment Title WGS of Actinomyces hominis str. UMB0859: urinary microbiota
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name Actinomyces_hominis_(17957_1_22)
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2000
   
SRA Experiment Id SRX3104361  (Link to NCBI )
Experiment Title WGS of Actinomyces graevenitzii str. UMB0286: urinary microbiota
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name Actinomyces_graevenitzii_(17957_1_83)
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2000
   
SRA Experiment Id SRX3104364  (Link to NCBI )
Experiment Title WGS of Acinetobacter septicus str. UMB1319: urinary microbiota
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name Acinetobacter_septicus_(17957_1_8)
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2000
   
SRA Experiment Id SRX3104365  (Link to NCBI )
Experiment Title WGS of Streptococcus agalactiae str. UMB0776 (maybe 908? Or 870?): urinary microbiota
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name Streptococcus_agalactiae_(17957_1_61)
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2000
   
SRA Experiment Id SRX3104362  (Link to NCBI )
Experiment Title WGS of Actinomyces europaeus str. UMB0652: urinary microbiota
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name Actinomyces_europaeus_(17957_1_76)
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2000
   
SRA Experiment Id SRX3104363  (Link to NCBI )
Experiment Title WGS of Actinobaculum urinale str. UMB0759: urinary microbiota
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name Actinobaculum_urinale_(17957_1_37)
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2000
   
SRA Experiment Id SRX3914949  (Link to NCBI )
Experiment Title A. urinae UMB1016
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name Aurinae_UMB1016
Library Layout PAIRED
Library Instrument ILLUMINA_MI_SEQ
   
SRA Experiment Id SRX3914948  (Link to NCBI )
Experiment Title A. urinae UMB0337
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name Aurinae_UMB0337
Library Layout PAIRED
Library Instrument ILLUMINA_MI_SEQ
   
SRA Experiment Id SRX3914947  (Link to NCBI )
Experiment Title A. urinae UMB2354
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name Aurinae_UMB2354
Library Layout PAIRED
Library Instrument ILLUMINA_MI_SEQ
   
SRA Experiment Id SRX3914946  (Link to NCBI )
Experiment Title A. urinae UMB2879
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name Aurinae_UMB2879
Library Layout PAIRED
Library Instrument ILLUMINA_MI_SEQ
   
SRA Experiment Id SRX3914945  (Link to NCBI )
Experiment Title A. urinae UMB0071
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name Aurinae_UMB0071
Library Layout PAIRED
Library Instrument ILLUMINA_MI_SEQ
   
SRA Experiment Id SRX3914944  (Link to NCBI )
Experiment Title A. urinae UMB2325
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name Aurinae_UMB2325
Library Layout PAIRED
Library Instrument ILLUMINA_MI_SEQ
   
SRA Experiment Id SRX3914943  (Link to NCBI )
Experiment Title A. urinae UMB5628
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name Aurinae_UMB5628
Library Layout PAIRED
Library Instrument ILLUMINA_MI_SEQ
   
SRA Experiment Id SRX3914942  (Link to NCBI )
Experiment Title A. urinae UMB6497
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name Aurinae_UMB6497
Library Layout PAIRED
Library Instrument ILLUMINA_MI_SEQ
   
SRA Experiment Id SRX3914941  (Link to NCBI )
Experiment Title A. urinae UMB3440
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name Aurinae_UMB3440
Library Layout PAIRED
Library Instrument ILLUMINA_MI_SEQ
   
SRA Experiment Id SRX3914940  (Link to NCBI )
Experiment Title A. urinae UMB3669
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name Aurinae_UMB3669
Library Layout PAIRED
Library Instrument ILLUMINA_MI_SEQ
   
SRA Experiment Id SRX3155943  (Link to NCBI )
Experiment Title WGS of Lactobacillus gasseri str. UMB0045: urinary microbiota
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name Lactobacillus_gasseri_(16933_8_18)
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2000
   
SRA Experiment Id SRX3104379  (Link to NCBI )
Experiment Title WGS of Brevibacterium paucivorans str. UMB1301: urinary microbiota
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name Brevibacterium_paucivorans_(17957_1_63)
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2000
   
SRA Experiment Id SRX3104410  (Link to NCBI )
Experiment Title WGS of Gardnerella vaginalis str. UMB0411: urinary microbiota
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name Gardnerella_vaginalis_(17957_1_36)
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2000
   
SRA Experiment Id SRX3104377  (Link to NCBI )
Experiment Title WGS of Corynebacterium aurimucosum str. UMB1300: urinary microbiota
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name Corynebacterium_aurimucosum_(17957_1_55)
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2000
   
SRA Experiment Id SRX3155945  (Link to NCBI )
Experiment Title WGS of Brevibacterium sp. str. UMB0680: urinary microbiota
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name Brevibacterium_luteolum_(17957_2_84)
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2000
   
SRA Experiment Id SRX3155944  (Link to NCBI )
Experiment Title WGS of Aerococcus urinae str. UMB0072: urinary microbiota
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name Aerococcus_urinae_(21837_8_75)
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2000
   
SRA Experiment Id SRX3104378  (Link to NCBI )
Experiment Title WGS of Citrobacter murliniae str. UMB1094: urinary microbiota
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name Citrobacter_murliniae_(17957_1_31)
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2000
   
SRA Experiment Id SRX3104411  (Link to NCBI )
Experiment Title WGS of Micrococcus lylae str. UMB0955: urinary microbiota
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name Micrococcus_lylae_(17957_1_15)
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2000
   
SRA Experiment Id SRX8019065  (Link to NCBI )
Experiment Title WGS: Lactobacillus jensenii UMB9245
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name Lj_UMB9245
Library Layout PAIRED
Library Instrument NEXT_SEQ_550
   
SRA Experiment Id SRX3155947  (Link to NCBI )
Experiment Title WGS of Klebsiella aerogenes str. UMB0295: urinary microbiota
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name Klebsiella_aerogenes_(17957_2_48)
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2000
   
SRA Experiment Id SRX8019060  (Link to NCBI )
Experiment Title WGS: Lactobacillus jensenii UMB7784
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name Lj_UMB7784
Library Layout PAIRED
Library Instrument NEXT_SEQ_550
   
SRA Experiment Id SRX3155946  (Link to NCBI )
Experiment Title WGS of Dolosicoccus paucivorans str. UMB0860: urinary microbiota
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name Dolosicoccus_paucivorans_(17957_2_30)
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2000
   
SRA Experiment Id SRX3155948  (Link to NCBI )
Experiment Title WGS of Bacillus sp. str. UMB0899: urinary microbiota
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name Bacillus_sp_(17957_1_62)
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2000
   
SRA Experiment Id SRX3104371  (Link to NCBI )
Experiment Title WGS of Streptococcus agalactiae str. UMB0049: urinary microbiota
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name Streptococcus_agalactiae_(21837_8_67)
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2000
   
SRA Experiment Id SRX3104372  (Link to NCBI )
Experiment Title WGS of Staphylococcus pettenkoferi str. UMB0834: urinary microbiota
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name Staphylococcus_pettenkoferi_(21837_8_69)
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2000
   
SRA Experiment Id SRX3104375  (Link to NCBI )
Experiment Title WGS of Bacillus aryabhattai str. UMB0500: urinary microbiota
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name Bacillus_aryabhattai_(17957_1_60)
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2000
   
SRA Experiment Id SRX3104376  (Link to NCBI )
Experiment Title WGS of Arthrobacter cumminsii str. UMB0715: urinary microbiota
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name Arthrobacter_albus_(17957_1_56)
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2000
   
SRA Experiment Id SRX3104373  (Link to NCBI )
Experiment Title WGS of Brachybacterium faecium str. UMB0905: urinary microbiota
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name Brachybacterium_faecium_(17957_1_70)
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2000
   
SRA Experiment Id SRX3104374  (Link to NCBI )
Experiment Title WGS of Bifidobacterium breve str. UMB0089: urinary microbiota
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name Bifidobacterium_breve_(17957_1_18)
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2000
   
SRA Experiment Id SRX3914959  (Link to NCBI )
Experiment Title A. urinae UMB1741
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name Aurinae_UMB1741
Library Layout PAIRED
Library Instrument ILLUMINA_MI_SEQ
   
SRA Experiment Id SRX1686449  (Link to NCBI )
Experiment Title Escherichia coli- E78
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name E.coli- E78
Library Layout PAIRED
Library Instrument ILLUMINA_MI_SEQ
   
SRA Experiment Id SRX3914958  (Link to NCBI )
Experiment Title A. urinae UMB0239
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name Aurinae_UMB0239
Library Layout PAIRED
Library Instrument ILLUMINA_MI_SEQ
   
SRA Experiment Id SRX3914957  (Link to NCBI )
Experiment Title A. urinae UMB0553
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name Aurinae_UMB0553
Library Layout PAIRED
Library Instrument ILLUMINA_MI_SEQ
   
SRA Experiment Id SRX3914956  (Link to NCBI )
Experiment Title A. urinae UMB0574
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name Aurinae_UMB0574
Library Layout PAIRED
Library Instrument ILLUMINA_MI_SEQ
   
SRA Experiment Id SRX3914955  (Link to NCBI )
Experiment Title A. urinae UMB0509
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name Aurinae_UMB0509
Library Layout PAIRED
Library Instrument ILLUMINA_MI_SEQ
   
SRA Experiment Id SRX3104409  (Link to NCBI )
Experiment Title WGS of Gardnerella vaginalis str. UMB0768: urinary microbiota
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name Gardnerella_vaginalis_(16933_8_63)
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2000
   
SRA Experiment Id SRX3914954  (Link to NCBI )
Experiment Title A. urinae UMB0621
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name Aurinae_UMB0621
Library Layout PAIRED
Library Instrument ILLUMINA_MI_SEQ
   
SRA Experiment Id SRX3914953  (Link to NCBI )
Experiment Title A. urinae UMB0722
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name Aurinae_UMB0722
Library Layout PAIRED
Library Instrument ILLUMINA_MI_SEQ
   
SRA Experiment Id SRX3104407  (Link to NCBI )
Experiment Title WGS of Dolosicoccus paucivorans str. UMB0852: urinary microbiota
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name Dolosicoccus_paucivorans_(17957_1_14)
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2000
   
SRA Experiment Id SRX3104408  (Link to NCBI )
Experiment Title WGS of Gardnerella vaginalis str. UMB1686: urinary microbiota
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name Gardnerella_vaginalis_(21837_8_73)
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2000
   
SRA Experiment Id SRX3914952  (Link to NCBI )
Experiment Title A. urinae UMB7382
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name Aurinae_UMB7382
Library Layout PAIRED
Library Instrument ILLUMINA_MI_SEQ
   
SRA Experiment Id SRX1688300  (Link to NCBI )
Experiment Title Gardnerella species 30-4
SRA Submission ID 2418683
Submitter Evann E Hilt (ehilt@luc.edu)
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name G. species 30-4
Library Layout PAIRED
Library Instrument Illumina MiSeq
Spot Length 300
   
SRA Experiment Id SRX3155950  (Link to NCBI )
Experiment Title WGS of Microbacterium sp. str. UMB0228: urinary microbiota
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name Microbacterium_sp_(17957_1_51)
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2000
   
SRA Experiment Id SRX3914951  (Link to NCBI )
Experiment Title A. urinae UMB7480
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name Aurinae_UMB7480
Library Layout PAIRED
Library Instrument ILLUMINA_MI_SEQ
   
SRA Experiment Id SRX3914950  (Link to NCBI )
Experiment Title A. urinae UMB0267
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name Aurinae_UMB0267
Library Layout PAIRED
Library Instrument ILLUMINA_MI_SEQ
   
SRA Experiment Id SRX3155952  (Link to NCBI )
Experiment Title WGS of Streptococcus sp. str. UMB0767: urinary microbiota
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name Streptococcus_agalactiae_(17957_1_53)
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2000
   
SRA Experiment Id SRX1688301  (Link to NCBI )
Experiment Title Gardnerella species 26-12
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name G. species 26-12
Library Layout PAIRED
Library Instrument ILLUMINA_MI_SEQ
   
SRA Experiment Id SRX1686201  (Link to NCBI )
Experiment Title Escherichia coli- E75
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name E.coli-E75
Library Layout PAIRED
Library Instrument ILLUMINA_MI_SEQ
   
SRA Experiment Id SRX3155951  (Link to NCBI )
Experiment Title WGS of Staphylococcus sp. str. UMB0328: urinary microbiota
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name Staphylococcus_sp_(21837_8_84)
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2000
Study Abstract Recently, bacterial communities (microbiota) have been discovered in the female bladder. Thus, the “sterile urine” paradigm is no longer valid. In an effort to provide a comprehensive view of the newly discovered female urinary microbiota (FUM), we have established an Enhanced Quantitative Urine Culture (EQUC) protocol. EQUC isolates bacteria from 75-90% of urine samples deemed ‘no growth’ by the standard clinical microbiology urine culture method. We have begun to sequence and annotate the genomes of these isolated bacteria.
Alias PRJNA316969
External Id BioProject=PRJNA316969