SRA Explorer

SRA explorer allows you to filter SRA data based on different criteria under GOLD, Text,
Scientific Name, Library Source, Sequencing Instrument and Sequencing Strategy categories.
Besides exploring SRA data you can also filter for projects already imported into GOLD or
not yet imported into GOLD.
For example, using this SRA explorer, you may search for Soil metagenomes from SRA that are
already in GOLD, were generated on Illumina platform with “Metagenomic” Library Source and “WGS”
library Strategy. To perform the above search, you would select filters as shown below:
Project GOLD ID → true
Scientific Name → soil metagenome
Library Source → METAGENOMIC
Instrument → Select all Illumina Instrument options
Sequencing Strategy → WGS

Choose Filters (Click on + to expand and select fields of interest for filtering)
+ GOLD (Filter for projects in/not in GOLD)
Include GOLD projects
+ Text Search
SRA Experiment Id: 
Experiment Title: 
Library Name: 
Library Selection: 
Library Layout: 
Sample Title: 
Study Title: 
Project GOLD ID: 
+ Scientific Name (Organism/Metagenome Scientific Name) 
Organism/Metagenome Scientific Name
(Ex: Mus musculus, termite metagenome): 
 
Organism Scientific Name
 Arabidopsis thaliana  Campylobacter jejuni
 Danio rerio  Drosophila melanogaster
 Escherichia coli  Homo sapiens
 Klebsiella pneumoniae  Legionella pneumophila
 Listeria monocytogenes  Mus musculus
 Mycobacterium tuberculosis  Oryza sativa
 Plasmodium falciparum  Saccharomyces cerevisiae
 Salmonella enterica  Staphylococcus aureus
 Streptococcus pneumoniae  Zea mays
 
Metagenome Scientific Name
 Aquatic Metagenome
 Bioreactor Metagenome
 Gut Metagenome
 Hot Springs Metagenome
 Human Metagenome
 Lake Water Metagenome
 Marine Metagenome
 Oil Field Metagenome
 Peat Metagenome
 Rhizosphere Metagenome
 Soil Metagenome
 Solid Waste Metagenome
 Viral Metagenome
 Wastewater Metagenome
 Wetland Metagenome
 
 
+ Library Source Options 
 GENOMIC  GENOMIC_SINGLE_CELL
 METAGENOMIC  METATRANSCRIPTOMIC
 OTHER  SYNTHETIC
 TRANSCRIPTOMIC  TRANSCRIPTOMIC_SINGLE_CELL
 VIRAL_RNA
+ Sequencing Instrument Options 
Select all 454 Instrument options
Select all Illumina Instrument options
 
 454 GS  454 GS 20
 454 GS FLX  454 GS FLX
 454 GS FLX Titanium  454 GS FLX+
 454 GS Junior  AB_310_GENETIC_ANALYZER
 AB_3130_GENETIC_ANALYZER  AB_3130_X_L_GENETIC_ANALYZER
 AB_3500_GENETIC_ANALYZER  AB_3500_X_L_GENETIC_ANALYZER
 AB_3730_GENETIC_ANALYZER  AB_3730_X_L_GENETIC_ANALYZER
 AB_5500_GENETIC_ANALYZER  AB_5500_XL_GENETIC_ANALYZER
 AB_5500_XL_W_GENETIC_ANALYSIS_SYSTEM  AB_SO_LI_D_3_PLUS_SYSTEM
 AB_SO_LI_D_4_HQ_SYSTEM  AB_SO_LI_D_4_SYSTEM
 AB_SO_LI_D_PI_SYSTEM  AB_SO_LI_D_SYSTEM
 AB_SO_LI_D_SYSTEM_2_0  AB_SO_LI_D_SYSTEM_3_0
 BGISEQ_500  COMPLETE_GENOMICS
 DNBSEQ_G_400  DNBSEQ_G_50
 DNBSEQ_T_7  GRID_ION
 HELICOS_HELI_SCOPE  HI_SEQ_X_FIVE
 HI_SEQ_X_TEN  ILLUMINA_GENOME_ANALYZER
 ILLUMINA_GENOME_ANALYZER_II  ILLUMINA_GENOME_ANALYZER_I_IX
 ILLUMINA_HI_SCAN_SQ  ILLUMINA_HI_SEQ_1000
 ILLUMINA_HI_SEQ_1500  ILLUMINA_HI_SEQ_2000
 ILLUMINA_HI_SEQ_2500  ILLUMINA_HI_SEQ_3000
 ILLUMINA_HI_SEQ_4000  ILLUMINA_HI_SEQ_X
 ILLUMINA_I_SEQ_100  ILLUMINA_MINI_SEQ
 ILLUMINA_MI_SEQ  ILLUMINA_NOVA_SEQ_6000
 ION_GENE_STUDIO_S_5  ION_TORRENT_PGM
 ION_TORRENT_PROTON  ION_TORRENT_S_5
 ION_TORRENT_S_5_XL  Illumina HiSeq X Ten
 Illumina MiniSeq  Illumina NextSeq 500
 Illumina NextSeq 550  Illumina NovaSeq 6000
 Illumina iSeq 100  Ion S5 XL
 MGISEQ_2000_RS  MIN_ION
 NEXT_SEQ_1000  NEXT_SEQ_2000
 NEXT_SEQ_500  NEXT_SEQ_550
 PAC_BIO_RS  PAC_BIO_RS_II
 PROMETH_ION  SEQUEL
 SEQUEL_II  Sequel
 Sequel II  UNSPECIFIED
 unspecified
+ Library (Sequencing) Strategy Options 
 AMPLICON  ATAC_SEQ
 BISULFITE_SEQ  CH_IA_PET
 CH_IP_SEQ  CLONE
 CLONEEND  CTS
 D_NASE_HYPERSENSITIVITY  EST
 FAIRE_SEQ  FINISHING
 FL_C_DNA  HI_C
 MBD_SEQ  ME_DIP_SEQ
 MI_RNA_SEQ  MRE_SEQ
 M_NASE_SEQ  NC_RNA_SEQ
 OTHER  POOLCLONE
 RAD_SEQ  RIP_SEQ
 RNA_SEQ  SELEX
 SYNTHETIC_LONG_READ  TARGETED_CAPTURE
 TETHERED_CHROMATIN_CONFORMATION_CAPTURE  TN_SEQ
 VALIDATION  WCS
 WGA  WGS
 WXS
 

 

 

Search against SRA data is running. It may take a minute or more to complete the search.