SRA Explorer

SRA explorer allows you to filter SRA data based on different criteria under GOLD, Text,
Scientific Name, Library Source, Sequencing Instrument and Sequencing Strategy categories.
Besides exploring SRA data you can also filter for projects already imported into GOLD or
not yet imported into GOLD.
For example, using this SRA explorer, you may search for Soil metagenomes from SRA that are
already in GOLD, were generated on Illumina platform with “Metagenomic” Library Source and “WGS”
library Strategy. To perform the above search, you would select filters as shown below:
Project GOLD ID → true
Scientific Name → soil metagenome
Library Source → METAGENOMIC
Instrument → Select all Illumina Instrument options
Sequencing Strategy → WGS

Choose Filters (Click on + to expand and select fields of interest for filtering)
+ GOLD (Filter for projects in/not in GOLD)
Include GOLD projects
+ Text Search
SRA Experiment Id: 
Experiment Title: 
Library Name: 
Library Selection: 
Library Layout: 
Sample Title: 
Study Title: 
Project GOLD ID: 
+ Scientific Name (Organism/Metagenome Scientific Name) 
Organism/Metagenome Scientific Name
(Ex: Mus musculus, termite metagenome)
 
Organism Scientific Name
 Homo sapiens
 Escherichia coli
 Legionella pneumophila
 Salmonella
 
Metagenome Scientific Name
 Aquatic Metagenome
 Bioreactor Metagenome
 Gut Metagenome
 Hot Springs Metagenome
 Human Metagenome
 Lake Water Metagenome
 Marine Metagenome
 Oil Field Metagenome
 Peat Metagenome
 Rhizosphere Metagenome
 Soil Metagenome
 Solid Waste Metagenome
 Viral Metagenome
 Wastewater Metagenome
 Wetland Metagenome
 
 
+ Library Source Options 
 GENOMIC  METAGENOMIC
 METATRANSCRIPTOMIC  OTHER
 SYNTHETIC  TRANSCRIPTOMIC
 VIRAL_RNA
+ Sequencing Instrument Options 
Select all 454 Instrument options
Select all Illumina Instrument options
 
 454 GS  454 GS 20
 454 GS FLX  454 GS FLX
 454 GS FLX Titanium  454 GS FLX+
 454 GS Junior  AB_310_GENETIC_ANALYZER
 AB_3130_GENETIC_ANALYZER  AB_3130_X_L_GENETIC_ANALYZER
 AB_3500_GENETIC_ANALYZER  AB_3500_X_L_GENETIC_ANALYZER
 AB_3730_GENETIC_ANALYZER  AB_3730_X_L_GENETIC_ANALYZER
 AB_5500_GENETIC_ANALYZER  AB_5500_XL_GENETIC_ANALYZER
 AB_5500_XL_W_GENETIC_ANALYSIS_SYSTEM  AB_SO_LI_D_3_PLUS_SYSTEM
 AB_SO_LI_D_4_HQ_SYSTEM  AB_SO_LI_D_4_SYSTEM
 AB_SO_LI_D_PI_SYSTEM  AB_SO_LI_D_SYSTEM
 AB_SO_LI_D_SYSTEM_2_0  AB_SO_LI_D_SYSTEM_3_0
 BGISEQ_500  COMPLETE_GENOMICS
 GRID_ION  HELICOS_HELI_SCOPE
 HI_SEQ_X_FIVE  HI_SEQ_X_TEN
 ILLUMINA_GENOME_ANALYZER  ILLUMINA_GENOME_ANALYZER_II
 ILLUMINA_GENOME_ANALYZER_I_IX  ILLUMINA_HI_SCAN_SQ
 ILLUMINA_HI_SEQ_1000  ILLUMINA_HI_SEQ_1500
 ILLUMINA_HI_SEQ_2000  ILLUMINA_HI_SEQ_2500
 ILLUMINA_HI_SEQ_3000  ILLUMINA_HI_SEQ_4000
 ILLUMINA_MI_SEQ  ION_TORRENT_PGM
 ION_TORRENT_PROTON  MIN_ION
 NEXT_SEQ_500  NEXT_SEQ_550
 PAC_BIO_RS  PAC_BIO_RS_II
 UNSPECIFIED  unspecified
 
+ Library (Sequencing) Strategy Options 
 AMPLICON  ATAC_SEQ
 BISULFITE_SEQ  CH_IA_PET
 CH_IP_SEQ  CLONE
 CLONEEND  CTS
 D_NASE_HYPERSENSITIVITY  EST
 FAIRE_SEQ  FINISHING
 FL_C_DNA  HI_C
 MBD_SEQ  ME_DIP_SEQ
 MI_RNA_SEQ  MRE_SEQ
 M_NASE_SEQ  NC_RNA_SEQ
 OTHER  POOLCLONE
 RAD_SEQ  RIP_SEQ
 RNA_SEQ  SELEX
 SYNTHETIC_LONG_READ  TARGETED_CAPTURE
 TETHERED_CHROMATIN_CONFORMATION_CAPTURE  TN_SEQ
 VALIDATION  WCS
 WGA  WGS
 WXS
 

 

 

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