SRA Explorer

SRA explorer allows you to filter SRA data based on different criteria under GOLD, Text,
Scientific Name, Library Source, Sequencing Instrument and Sequencing Strategy categories.
Besides exploring SRA data you can also filter for projects already imported into GOLD or
not yet imported into GOLD.
For example, using this SRA explorer, you may search for Soil metagenomes from SRA that are
already in GOLD, were generated on Illumina platform with “Metagenomic” Library Source and “WGS”
library Strategy. To perform the above search, you would select filters as shown below:
Project GOLD ID → true
Scientific Name → soil metagenome
Library Source → METAGENOMIC
Instrument → Select all Illumina Instrument options
Sequencing Strategy → WGS

Choose Filters (Click on + to expand and select fields of interest for filtering)
+ GOLD (Filter for projects in/not in GOLD)
Include GOLD projects
+ Text Search
SRA Experiment Id: 
Experiment Title: 
Library Name: 
Library Selection: 
Library Layout: 
Sample Title: 
Study Title: 
Project GOLD ID: 
+ Scientific Name (Organism/Metagenome Scientific Name) 
Organism/Metagenome Scientific Name
(Ex: Mus musculus, termite metagenome): 
 
Organism Scientific Name
 Arabidopsis thaliana  Campylobacter jejuni
 Danio rerio  Drosophila melanogaster
 Escherichia coli  Homo sapiens
 Klebsiella pneumoniae  Legionella pneumophila
 Listeria monocytogenes  Mus musculus
 Mycobacterium tuberculosis  Oryza sativa
 Plasmodium falciparum  Saccharomyces cerevisiae
 Salmonella enterica  Staphylococcus aureus
 Streptococcus pneumoniae  Zea mays
 
Metagenome Scientific Name
 Aquatic Metagenome
 Bioreactor Metagenome
 Gut Metagenome
 Hot Springs Metagenome
 Human Metagenome
 Lake Water Metagenome
 Marine Metagenome
 Oil Field Metagenome
 Peat Metagenome
 Rhizosphere Metagenome
 Soil Metagenome
 Solid Waste Metagenome
 Viral Metagenome
 Wastewater Metagenome
 Wetland Metagenome
 
 
+ Library Source Options 
 GENOMIC  GENOMIC_SINGLE_CELL
 METAGENOMIC  METATRANSCRIPTOMIC
 OTHER  SYNTHETIC
 TRANSCRIPTOMIC  TRANSCRIPTOMIC_SINGLE_CELL
 VIRAL_RNA
+ Sequencing Instrument Options 
Select all 454 Instrument options
Select all Illumina Instrument options
 
 454 GS  454 GS 20
 454 GS FLX  454 GS FLX
 454 GS FLX Titanium  454 GS FLX+
 454 GS Junior  AB_310_GENETIC_ANALYZER
 AB_3130_GENETIC_ANALYZER  AB_3130_X_L_GENETIC_ANALYZER
 AB_3500_GENETIC_ANALYZER  AB_3500_X_L_GENETIC_ANALYZER
 AB_3730_GENETIC_ANALYZER  AB_3730_X_L_GENETIC_ANALYZER
 AB_5500_GENETIC_ANALYZER  AB_5500_XL_GENETIC_ANALYZER
 AB_5500_XL_W_GENETIC_ANALYSIS_SYSTEM  AB_SO_LI_D_3_PLUS_SYSTEM
 AB_SO_LI_D_4_HQ_SYSTEM  AB_SO_LI_D_4_SYSTEM
 AB_SO_LI_D_PI_SYSTEM  AB_SO_LI_D_SYSTEM
 AB_SO_LI_D_SYSTEM_2_0  AB_SO_LI_D_SYSTEM_3_0
 BGISEQ_500  COMPLETE_GENOMICS
 DNBSEQ_G_400  DNBSEQ_T_7
 GRID_ION  HELICOS_HELI_SCOPE
 HI_SEQ_X_FIVE  HI_SEQ_X_TEN
 ILLUMINA_GENOME_ANALYZER  ILLUMINA_GENOME_ANALYZER_II
 ILLUMINA_GENOME_ANALYZER_I_IX  ILLUMINA_HI_SCAN_SQ
 ILLUMINA_HI_SEQ_1000  ILLUMINA_HI_SEQ_1500
 ILLUMINA_HI_SEQ_2000  ILLUMINA_HI_SEQ_2500
 ILLUMINA_HI_SEQ_3000  ILLUMINA_HI_SEQ_4000
 ILLUMINA_HI_SEQ_X  ILLUMINA_I_SEQ_100
 ILLUMINA_MINI_SEQ  ILLUMINA_MI_SEQ
 ILLUMINA_NOVA_SEQ_6000  ION_GENE_STUDIO_S_5
 ION_TORRENT_PGM  ION_TORRENT_PROTON
 ION_TORRENT_S_5  ION_TORRENT_S_5_XL
 Illumina HiSeq X Ten  Illumina MiniSeq
 Illumina NextSeq 500  Illumina NextSeq 550
 Illumina NovaSeq 6000  Illumina iSeq 100
 Ion S5 XL  MGISEQ_2000_RS
 MIN_ION  NEXT_SEQ_1000
 NEXT_SEQ_2000  NEXT_SEQ_500
 NEXT_SEQ_550  PAC_BIO_RS
 PAC_BIO_RS_II  PROMETH_ION
 SEQUEL  SEQUEL_II
 Sequel  Sequel II
 UNSPECIFIED  unspecified
 
+ Library (Sequencing) Strategy Options 
 AMPLICON  ATAC_SEQ
 BISULFITE_SEQ  CH_IA_PET
 CH_IP_SEQ  CLONE
 CLONEEND  CTS
 D_NASE_HYPERSENSITIVITY  EST
 FAIRE_SEQ  FINISHING
 FL_C_DNA  HI_C
 MBD_SEQ  ME_DIP_SEQ
 MI_RNA_SEQ  MRE_SEQ
 M_NASE_SEQ  NC_RNA_SEQ
 OTHER  POOLCLONE
 RAD_SEQ  RIP_SEQ
 RNA_SEQ  SELEX
 SS_RNA_SEQ  SYNTHETIC_LONG_READ
 TARGETED_CAPTURE  TETHERED_CHROMATIN_CONFORMATION_CAPTURE
 TN_SEQ  VALIDATION
 WCS  WGA
 WGS  WXS
 
 

 

 

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