Advanced Search

Advanced Search allows you to search across different levels (Study, Biosample/Organisms,
Projects and Analysis Projects) in GOLD.
For example using this advanced search wizard, you may select Complete and Published, Whole
Genome Sequencing projects of Finished quality for Gram negative organisms with GenBank sequence data.
To perform the above search you would select filters as shown below:
Organism.Gram Stain → Gram-
Project.Sequencing Strategy → Whole Genome Sequencing
Project.Project Status → Complete and Published
Project.Sequencing Quality → Level 6: Finished
Analysis+Project.Genbank ID → true

Choose Filters (Click on + to expand and select fields of interest for filtering)
+ Study Fields
Study Name  
Description  
Relevance
Is Public  
Ecosystem  
Ecosystem Category  
Ecosystem Type  
Ecosystem Subtype  
Specific Ecosystem  
Ecosystem Path ID
+ Biosample Fields
Biosample Name  
Habitat  
Community  
Location  
Is Public  
Ecosystem  
Ecosystem Category  
Ecosystem Type  
Ecosystem Subtype  
Specific Ecosystem  
Ecosystem Path Id
Sample Isolation Country/Ocean  
Broad-scale Environmental Context  
Local Environmental Context  
Environmental Medium  
Isolation Host Name  
Host Gender  
Host Body Site  
Host Body Subsite  
Host Body Product  
+ Organism Fields
Organism Name  
Domain
Genus  
Species  
Strain  
Phylum  
NCBI Taxonomy ID
Type Strain  
Culture Collection ID  
Organism Type  
Cultured  
Culture Type  
Uncultured Type  
Is Public  
Cell Shape  
Gram Stain  
Motility  
Oxygen Requirement  
Salinity  
Sporulation  
Isolation Country/Ocean  
Ecosystem  
Ecosystem Category  
Ecosystem Type  
Ecosystem Subtype  
Specific Ecosystem  
Ecosystem Path Id
Isolation Host Name  
Host Gender  
Host Body Site  
Host Body Subsite  
Host Body Product  
+ Project Fields
GOLD Project ID  
Project Name  
NCBI BioProject Name  
NCBI BioProject Accession  
NCBI BioSample Accession  
Project Status  
Project Description  
Is Public  
Specimen  
Sequencing Strategy  
Genome Publication  
Sequencing Status  
Sequencing Quality  
ITS SP ID
+ Analysis Project Fields
Analysis Project Name  
Analysis Project Type  
Analysis System  
IMG Completion Date Select date:
Analysis Project Description  
Is Public  
Domain  
NCBI Superkingdom  
NCBI Kingdom  
NCBI Phylum  
NCBI Class  
NCBI Order  
NCBI Family  
NCBI Genus  
NCBI Species  
NCBI Taxonomy Lineage  
GTDB Superkingdom  
GTDB Phylum  
GTDB Class  
GTDB Order  
GTDB Family  
GTDB Genus  
GTDB Species  
GTDB Taxonomy Lineage  
GTDB Version ID  
Genbank Anomalous Assembly  
Genbank Anomalous Reason  
IMG Taxon ID   Search specific IMG Taxon ID:

OR
IMG RNA-Seq ID
IMG Metagenome bin count
IMG Predicted viruses
Genbank ID   Search specific Genbank ID:

OR
Assembly Accession  
ITS Analysis Project ID   Search specific ITS Analysis Project ID:

OR
Library Names  
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