SRA STUDY
|
SRA Study Id
|
ERP120075
(Link to NCBI )
|
Study Title
|
Complete genome sequences of three novel Clostridia strains isolated from a chain elongation reactor
|
SRA Experiments
|
SRA Experiment Id |
ERX3967079
(Link to NCBI ) |
Experiment Title |
NextSeq 500 paired end sequencing |
Exp Library Strategy |
WGS |
Library Source |
GENOMIC |
Library Selection |
size fractionation |
Library Name |
unspecified |
Library Layout |
PAIRED |
Library Instrument |
NEXT_SEQ_500 |
|
|
SRA Experiment Id |
ERX3967219
(Link to NCBI ) |
Experiment Title |
MinION sequencing |
Exp Library Strategy |
WGS |
Library Source |
GENOMIC |
Library Selection |
unspecified |
Library Name |
unspecified |
Library Layout |
SINGLE |
Library Instrument |
MIN_ION |
|
|
SRA Experiment Id |
ERX3967221
(Link to NCBI ) |
Experiment Title |
MinION sequencing |
Exp Library Strategy |
WGS |
Library Source |
GENOMIC |
Library Selection |
unspecified |
Library Name |
unspecified |
Library Layout |
SINGLE |
Library Instrument |
MIN_ION |
|
|
SRA Experiment Id |
ERX3967078
(Link to NCBI ) |
Experiment Title |
NextSeq 500 paired end sequencing |
Exp Library Strategy |
WGS |
Library Source |
GENOMIC |
Library Selection |
size fractionation |
Library Name |
unspecified |
Library Layout |
PAIRED |
Library Instrument |
NEXT_SEQ_500 |
|
|
SRA Experiment Id |
ERX3967077
(Link to NCBI ) |
Experiment Title |
NextSeq 500 paired end sequencing |
Exp Library Strategy |
WGS |
Library Source |
GENOMIC |
Library Selection |
size fractionation |
Library Name |
unspecified |
Library Layout |
PAIRED |
Library Instrument |
NEXT_SEQ_500 |
|
|
SRA Experiment Id |
ERX3967220
(Link to NCBI ) |
Experiment Title |
MinION sequencing |
Exp Library Strategy |
WGS |
Library Source |
GENOMIC |
Library Selection |
unspecified |
Library Name |
unspecified |
Library Layout |
SINGLE |
Library Instrument |
MIN_ION |
|
Study Abstract
|
Hitherto, few bacterial species have been reported to convert lactate to n-caproate. Here, we report the complete genome sequences of three novel Clostridia strains that were isolated from an anaerobic bioreactor producing caproate from lactate-rich corn silage. The strains were isolated on lactate as sole carbon source and produce n-caproate, n-butyrate and iso-butyrate, besides acetate. Genomes were assembled using a short-read and long-read sequencing hybrid approach and genes involved in lactate-based chain elongation were identified.
|
Alias
|
ena-STUDY-HELMHOLTZ CENTRE FOR ENVIRONMENTAL RESEARCH - UFZ-18-02-2020-13:22:51:987-430
|
External Id
|
PRJEB36835
|