SRA EXPERIMENT
SRA Experiment Id ERX3967220  (Link to NCBI )
Experiment Title MinION sequencing
SRA Study
SRA Study Id ERP120075  (Link to NCBI )
Study Title Complete genome sequences of three novel Clostridia strains isolated from a chain elongation reactor
Study Abstract Hitherto, few bacterial species have been reported to convert lactate to n-caproate. Here, we report the complete genome sequences of three novel Clostridia strains that were isolated from an anaerobic bioreactor producing caproate from lactate-rich corn silage. The strains were isolated on lactate as sole carbon source and produce n-caproate, n-butyrate and iso-butyrate, besides acetate. Genomes were assembled using a short-read and long-read sequencing hybrid approach and genes involved in lactate-based chain elongation were identified.
Alias ena-STUDY-HELMHOLTZ CENTRE FOR ENVIRONMENTAL RESEARCH - UFZ-18-02-2020-13:22:51:987-430
External Id PRJEB36835
SRA Sample
SRA Sample Id ERS4331465  (Link to NCBI )
Title Clostridia UBA4871 sp. strain BL-4
SRA Run
SRA Run Id ERR3959416  (Link to NCBI )
Spots 186991
Bases 1183596749
Size 1081394853
Published Date 2020-06-05
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection unspecified
Library Name unspecified
Library Layout SINGLE
Library Instrument MIN_ION
Exp. Description
Spot Length