SRA STUDY
SRA Study Id ERP023954  (Link to NCBI )
Study Title Microbiome dynamics and adaptation of expression signatures during methane production failure and process recovery
SRA Experiments
SRA Experiment Id ERX2088799  (Link to NCBI )
Experiment Title Illumina HiSeq 2500 sequencing
Exp Library Strategy RNA_SEQ
Library Source METATRANSCRIPTOMIC
Library Selection RANDOM
Library Name unspecified
Library Layout SINGLE
Library Instrument ILLUMINA_HI_SEQ_2500
   
SRA Experiment Id ERX2088797  (Link to NCBI )
Experiment Title Illumina HiSeq 2500 sequencing
Exp Library Strategy RNA_SEQ
Library Source METATRANSCRIPTOMIC
Library Selection RANDOM
Library Name unspecified
Library Layout SINGLE
Library Instrument ILLUMINA_HI_SEQ_2500
   
SRA Experiment Id ERX2088798  (Link to NCBI )
Experiment Title Illumina HiSeq 2500 sequencing
Exp Library Strategy RNA_SEQ
Library Source METATRANSCRIPTOMIC
Library Selection RANDOM
Library Name unspecified
Library Layout SINGLE
Library Instrument ILLUMINA_HI_SEQ_2500
   
SRA Experiment Id ERX2088795  (Link to NCBI )
Experiment Title Illumina HiSeq 2500 sequencing
Exp Library Strategy RNA_SEQ
Library Source METATRANSCRIPTOMIC
Library Selection RANDOM
Library Name unspecified
Library Layout SINGLE
Library Instrument ILLUMINA_HI_SEQ_2500
   
SRA Experiment Id ERX2088796  (Link to NCBI )
Experiment Title Illumina HiSeq 2500 sequencing
Exp Library Strategy RNA_SEQ
Library Source METATRANSCRIPTOMIC
Library Selection RANDOM
Library Name unspecified
Library Layout SINGLE
Library Instrument ILLUMINA_HI_SEQ_2500
   
SRA Experiment Id ERX2088793  (Link to NCBI )
Experiment Title Illumina HiSeq 2500 sequencing
Exp Library Strategy RNA_SEQ
Library Source METATRANSCRIPTOMIC
Library Selection RANDOM
Library Name unspecified
Library Layout SINGLE
Library Instrument ILLUMINA_HI_SEQ_2500
   
SRA Experiment Id ERX2088794  (Link to NCBI )
Experiment Title Illumina HiSeq 2500 sequencing
Exp Library Strategy RNA_SEQ
Library Source METATRANSCRIPTOMIC
Library Selection RANDOM
Library Name unspecified
Library Layout SINGLE
Library Instrument ILLUMINA_HI_SEQ_2500
   
SRA Experiment Id ERX2088791  (Link to NCBI )
Experiment Title Illumina HiSeq 2500 sequencing
Exp Library Strategy RNA_SEQ
Library Source METATRANSCRIPTOMIC
Library Selection RANDOM
Library Name unspecified
Library Layout SINGLE
Library Instrument ILLUMINA_HI_SEQ_2500
   
SRA Experiment Id ERX2088792  (Link to NCBI )
Experiment Title Illumina HiSeq 2500 sequencing
Exp Library Strategy RNA_SEQ
Library Source METATRANSCRIPTOMIC
Library Selection RANDOM
Library Name unspecified
Library Layout SINGLE
Library Instrument ILLUMINA_HI_SEQ_2500
Study Abstract During anaerobic digestion (AD) the microbial population is key to methane production in biogas plants, yet its composition is poorly characterized. This study aimed to uncover microbial dynamics and transcriptional adaptations during mesophilic AD of maize silage and slurry. While one digester performed under optimal conditions, we also evaluated the microbiome during a temperature drop mediated process failure accompanied by acidification and how it contributed to a process recovery. Composition and pathway activities were analyzed by whole genome shotgun (WGS) and metatranscriptome sequencing, respectively. A biodiversity of 112 species was observed with noticeable shifts over process time. Although we could identify four distinct groups of microbes with a correlating versatility according to substrate and to process disturbance, we also monitored tremendous effects on gene expression especially of the archaeal methane metabolism. Particularly, the expression of acetogenotrophic methanogenesis related genes was identified to be relevant for process regeneration.
Alias ena-STUDY-FRAUNHOFER IGB-06-07-2017-09:55:52:145-404
External Id BioProject=PRJEB21678