SRA EXPERIMENT
SRA Experiment Id ERX2088791  (Link to NCBI )
Experiment Title Illumina HiSeq 2500 sequencing
SRA Study
SRA Study Id ERP023954  (Link to NCBI )
Study Title Microbiome dynamics and adaptation of expression signatures during methane production failure and process recovery
Study Abstract During anaerobic digestion (AD) the microbial population is key to methane production in biogas plants, yet its composition is poorly characterized. This study aimed to uncover microbial dynamics and transcriptional adaptations during mesophilic AD of maize silage and slurry. While one digester performed under optimal conditions, we also evaluated the microbiome during a temperature drop mediated process failure accompanied by acidification and how it contributed to a process recovery. Composition and pathway activities were analyzed by whole genome shotgun (WGS) and metatranscriptome sequencing, respectively. A biodiversity of 112 species was observed with noticeable shifts over process time. Although we could identify four distinct groups of microbes with a correlating versatility according to substrate and to process disturbance, we also monitored tremendous effects on gene expression especially of the archaeal methane metabolism. Particularly, the expression of acetogenotrophic methanogenesis related genes was identified to be relevant for process regeneration.
Alias ena-STUDY-FRAUNHOFER IGB-06-07-2017-09:55:52:145-404
External Id BioProject=PRJEB21678
SRA Sample
SRA Sample Id ERS1816456  (Link to NCBI )
Title I_0d_RNA
SRA Run
SRA Run Id ERR2029734  (Link to NCBI )
Spots 31874124
Bases 4462377360
Size 2280163080
Published Date 2018-07-04
Exp Library Strategy RNA_SEQ
Library Source METATRANSCRIPTOMIC
Library Selection RANDOM
Library Name unspecified
Library Layout SINGLE
Library Instrument ILLUMINA_HI_SEQ_2500
Exp. Description
Spot Length