SRA EXPERIMENT
SRA Experiment Id ERX2360372  (Link to NCBI )
Experiment Title Illumina HiSeq 4000 paired end sequencing
SRA Study
SRA Study Id ERP106940  (Link to NCBI )
Study Title Gene expression of indoor fungal communities under damp building conditions : implications for human health
Study Abstract Dampness and visible mold growth in homes is associated with negative human health outcomes but causal relationships between fungal exposure and health are not well established. The purpose of this study was to determine if dampness in buildings impacts fungal community gene expression and how, in turn, gene expression may modulate human health impacts. A metatranscriptomic study was performed on house dust fungal communities to investigate the expression of genes and metabolic processes in chamber experiments at water activity levels of 0.5, 0.85 and 1.0. Fungi at water activities as low as 0.5 were metabolically active, focusing their transcriptional resources on primary processes essential for cell maintenance. Metabolic complexity increased with water activity where communities at 1.0 displayed more diverse secondary metabolic processes. Greater gene expression at increasing water activities has important implications for human health: fungal communities at 1.0 aw up-regulated a greater number of allergen, mycotoxin, and pathogenicity encoding genes versus communities at 0.85 and 0.5 aw. In damp buildings, fungi may display increases in secondary metabolic processes with the potential for greater per cell production of allergens, toxins, and pathogenicity. Assessments in wet versus dry buildings that do not account for this elevated health impact may not accurately reflect exposure.
Alias ena-STUDY-YALE UNIVERSITY-20-02-2018-04:43:16:981-604
External Id BioProject=PRJEB25059
SRA Sample
SRA Sample Id ERS2212933  (Link to NCBI )
Title 100Y
SRA Run
SRA Run Id ERR2309080  (Link to NCBI )
Spots 19877401
Bases 3021364952
Size 1467714773
Published Date 2018-03-03
Exp Library Strategy RNA_SEQ
Library Source METATRANSCRIPTOMIC
Library Selection cDNA
Library Name NA
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_4000
Exp. Description
Spot Length