SRA EXPERIMENT
SRA Experiment Id SRX1142400  (Link to NCBI )
Experiment Title Whole genome shotgun of obese human gut microbiota
SRA Study
SRA Study Id SRP062282  (Link to NCBI )
Study Title Characterization of the distal gut microbiota in obese patients following a weight-loss intervention using whole metagenome shotgun sequencing
Study Abstract To gain more insight into the interconnection between microbiota, obesity and diet, we analyzed the metagenome of 16 patients following a weight-loss program based on a very low calorie inulin-enriched formula diet. In this longitudinal study we used shotgun sequencing of stool DNA to look at taxonomic and functional changes at different phases of the program. In 2 years we sequenced fecal samples at six time points, the baseline (before intervention, = T0), after diet intervention, (3 months later: T3), after reintroduction phase (T6), and three time points at the maintenance phase i.e. month 12 (T12), month 18 (T18) and month 24 (T24). In parallel, clinical parameters were monitored in order to establish potential relationships between microbiota and obesity-associated-disease particularly hypertension, insulin resistance, fatty liver and the metabolic syndrome. Moreover we analyzed the marker potential of microbial parameters for weight loss maintenance success.
Alias PRJNA290729
External Id BioProject=PRJNA290729
SRA Sample
SRA Sample Id SRS1028296  (Link to NCBI )
SRA Run
SRA Run Id SRR2155392  (Link to NCBI )
Spots 10441072
Bases 2109096544
Size 1275301028
Published Date 2015-08-05
Exp Library Strategy WGS
Library Source METAGENOMIC
Library Selection PCR
Library Name AS64_6
Library Layout PAIRED
Library Instrument Illumina HiSeq 2500
Exp. Description
Spot Length