SRA EXPERIMENT
SRA Experiment Id SRX024861
Experiment Title Complete genome sequence of adherent invasive Escherichia coli UM146 isolated from ileal Crohn’s disease biopsy tissue
SRA Study
SRA Study Id SRP003159
Study Title Escherichia coli UM146 Genome sequencing
SRA Sample
SRA Sample Id SRS085789
Sample Title Complete genome sequence of adherent invasive Escherichia coli UM146 isolated from ileal Crohn’s disease biopsy tissue
NCBI Biosample Id SAMN00017915
Sample Description Complete genome sequence of adherent invasive Escherichia coli UM146 isolated from ileal Crohn’s disease biopsy tissue. Denis O. Krause, Ainsley C. Little, Scot E. Dowd, Charles N. Bernstein Department of Animal Science, Department of Medical Microbiology, Department of Internal Medicine, University of Manitoba, Winnipeg, R3T 2N2, Canada. Research and Testing Laboratory, Lubbock, TX 79407 Adherent invasive Escherichia coli (AIEC) is a new type of E. coli that is highly invasive to enterocytes, can survive in macrophages, does not have the typical toxin genes associated with diarrheagenic strains, and is associated with 25 – 35% of Crohn’s disease (CD) patients. have completed the genome sequence AIEC strain UM146 a highly invasive strain associated with ileal CD.
Scientific Name Escherichia coli UM146
NCBI Taxonomy Id 869729
SRA Run
SRA Run Id SRR062269
SRA Run Spots 225673
SRA Run Bases 118755170
SRA Run Size 260873885
Library Name EcoliUM146
Library Instrument 454 GS FLX Titanium
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Layout SINGLE