SRA EXPERIMENT
SRA Experiment Id SRX007029  (Link to NCBI )
Experiment Title
SRA Study
SRA Study Id SRP000962  (Link to NCBI )
Study Title Giant panda genome sequencing project
SRA Sample
SRA Sample Id SRS004381  (Link to NCBI )
Sample Title Jingjing, a 3-year old female panda
NCBI Biosample Id SAMN00008160
Sample Description We sequenced a 3-year old female panda named Jingjing, who came from the Chengdu Research Base of Giant Panda Breeding and was chosen as the model of 2008 Olympic Mascot. The captive breeding of pandas follows principles meant to maintain genetic polymorphism, so it is difficult to find a homozygous panda because mating of close relatives is not allowed. The genetic background of Jingjing’s father comes solely from pandas in the Liangshan Mountain, and Jingjing’s mother’s genetic background has half from pandas in the Liangshan Mountain and half from the Minshan Mountain. Liangshan and Minshan are the two major locations of wild giant pandas. So Jingjing is a relatively good candidate for sequencing.
Scientific Name Ailuropoda melanoleuca
NCBI Taxonomy Id 9646
SRA Run
SRA Run Id SRR019945  (Link to NCBI )
SRA Run Spots 3610304
SRA Run Bases 252721280
SRA Run Size 154259677
   
SRA Run Id SRR019944  (Link to NCBI )
SRA Run Spots 7253533
SRA Run Bases 507747310
SRA Run Size 323608289
   
SRA Run Id SRR019947  (Link to NCBI )
SRA Run Spots 3608811
SRA Run Bases 252616770
SRA Run Size 157314819
   
SRA Run Id SRR019946  (Link to NCBI )
SRA Run Spots 3702104
SRA Run Bases 259147280
SRA Run Size 161202954
   
SRA Run Id SRR019951  (Link to NCBI )
SRA Run Spots 3279669
SRA Run Bases 229576830
SRA Run Size 142200541
   
SRA Run Id SRR019943  (Link to NCBI )
SRA Run Spots 7390485
SRA Run Bases 517333950
SRA Run Size 331429450
   
SRA Run Id SRR019942  (Link to NCBI )
SRA Run Spots 9055773
SRA Run Bases 633904110
SRA Run Size 462795314
   
SRA Run Id SRR019950  (Link to NCBI )
SRA Run Spots 3607031
SRA Run Bases 252492170
SRA Run Size 156081135
   
SRA Run Id SRR019949  (Link to NCBI )
SRA Run Spots 3426872
SRA Run Bases 239881040
SRA Run Size 149184008
   
SRA Run Id SRR019948  (Link to NCBI )
SRA Run Spots 3690390
SRA Run Bases 258327300
SRA Run Size 162578888
Library Name PAfwDADTAAPE
Library Instrument ILLUMINA_GENOME_ANALYZER_II
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Layout PAIRED