SRA EXPERIMENT
SRA Experiment Id SRX007028  (Link to NCBI )
Experiment Title
SRA Study
SRA Study Id SRP000962  (Link to NCBI )
Study Title Giant panda genome sequencing project
SRA Sample
SRA Sample Id SRS004381  (Link to NCBI )
Sample Title Jingjing, a 3-year old female panda
NCBI Biosample Id SAMN00008160
Sample Description We sequenced a 3-year old female panda named Jingjing, who came from the Chengdu Research Base of Giant Panda Breeding and was chosen as the model of 2008 Olympic Mascot. The captive breeding of pandas follows principles meant to maintain genetic polymorphism, so it is difficult to find a homozygous panda because mating of close relatives is not allowed. The genetic background of Jingjing’s father comes solely from pandas in the Liangshan Mountain, and Jingjing’s mother’s genetic background has half from pandas in the Liangshan Mountain and half from the Minshan Mountain. Liangshan and Minshan are the two major locations of wild giant pandas. So Jingjing is a relatively good candidate for sequencing.
Scientific Name Ailuropoda melanoleuca
NCBI Taxonomy Id 9646
SRA Run
SRA Run Id SRR019936  (Link to NCBI )
SRA Run Spots 9389890
SRA Run Bases 657292300
SRA Run Size 425811695
   
SRA Run Id SRR019935  (Link to NCBI )
SRA Run Spots 9423332
SRA Run Bases 659633240
SRA Run Size 412886847
   
SRA Run Id SRR019941  (Link to NCBI )
SRA Run Spots 12764840
SRA Run Bases 893538800
SRA Run Size 592402146
   
SRA Run Id SRR019940  (Link to NCBI )
SRA Run Spots 13002934
SRA Run Bases 910205380
SRA Run Size 626375210
   
SRA Run Id SRR019938  (Link to NCBI )
SRA Run Spots 11139458
SRA Run Bases 779762060
SRA Run Size 508706600
   
SRA Run Id SRR019937  (Link to NCBI )
SRA Run Spots 10992309
SRA Run Bases 769461630
SRA Run Size 522950377
   
SRA Run Id SRR019939  (Link to NCBI )
SRA Run Spots 13230640
SRA Run Bases 926144800
SRA Run Size 626439017
Library Name PAfwDADTBAPE
Library Instrument ILLUMINA_GENOME_ANALYZER_II
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Layout PAIRED