SRA EXPERIMENT
SRA Experiment Id SRX007027  (Link to NCBI )
Experiment Title
SRA Study
SRA Study Id SRP000962  (Link to NCBI )
Study Title Giant panda genome sequencing project
SRA Sample
SRA Sample Id SRS004381  (Link to NCBI )
Sample Title Jingjing, a 3-year old female panda
NCBI Biosample Id SAMN00008160
Sample Description We sequenced a 3-year old female panda named Jingjing, who came from the Chengdu Research Base of Giant Panda Breeding and was chosen as the model of 2008 Olympic Mascot. The captive breeding of pandas follows principles meant to maintain genetic polymorphism, so it is difficult to find a homozygous panda because mating of close relatives is not allowed. The genetic background of Jingjing’s father comes solely from pandas in the Liangshan Mountain, and Jingjing’s mother’s genetic background has half from pandas in the Liangshan Mountain and half from the Minshan Mountain. Liangshan and Minshan are the two major locations of wild giant pandas. So Jingjing is a relatively good candidate for sequencing.
Scientific Name Ailuropoda melanoleuca
NCBI Taxonomy Id 9646
SRA Run
SRA Run Id SRR019934  (Link to NCBI )
SRA Run Spots 16414863
SRA Run Bases 1149040410
SRA Run Size 810795154
   
SRA Run Id SRR019933  (Link to NCBI )
SRA Run Spots 17211592
SRA Run Bases 1204811440
SRA Run Size 860217821
   
SRA Run Id SRR019930  (Link to NCBI )
SRA Run Spots 13685436
SRA Run Bases 957980520
SRA Run Size 667044691
   
SRA Run Id SRR019932  (Link to NCBI )
SRA Run Spots 16954438
SRA Run Bases 1186810660
SRA Run Size 846460773
   
SRA Run Id SRR019931  (Link to NCBI )
SRA Run Spots 13695997
SRA Run Bases 958719790
SRA Run Size 673580554
   
SRA Run Id SRR019929  (Link to NCBI )
SRA Run Spots 11146660
SRA Run Bases 780266200
SRA Run Size 534816931
   
SRA Run Id SRR019928  (Link to NCBI )
SRA Run Spots 11047944
SRA Run Bases 773356080
SRA Run Size 519874008
Library Name PAfwDADTCAPE
Library Instrument ILLUMINA_GENOME_ANALYZER_II
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Layout PAIRED