SRA Experiment Id SRX007023  (Link to NCBI )
Experiment Title
SRA Study
SRA Study Id SRP000962  (Link to NCBI )
Study Title Giant panda genome sequencing project
SRA Sample
SRA Sample Id SRS004381  (Link to NCBI )
Sample Title Jingjing, a 3-year old female panda
NCBI Biosample Id SAMN00008160
Sample Description We sequenced a 3-year old female panda named Jingjing, who came from the Chengdu Research Base of Giant Panda Breeding and was chosen as the model of 2008 Olympic Mascot. The captive breeding of pandas follows principles meant to maintain genetic polymorphism, so it is difficult to find a homozygous panda because mating of close relatives is not allowed. The genetic background of Jingjing’s father comes solely from pandas in the Liangshan Mountain, and Jingjing’s mother’s genetic background has half from pandas in the Liangshan Mountain and half from the Minshan Mountain. Liangshan and Minshan are the two major locations of wild giant pandas. So Jingjing is a relatively good candidate for sequencing.
Scientific Name Ailuropoda melanoleuca
NCBI Taxonomy Id 9646
SRA Run Id SRR019912  (Link to NCBI )
SRA Run Spots 10391067
SRA Run Bases 1558660050
SRA Run Size 964213948
SRA Run Id SRR019911  (Link to NCBI )
SRA Run Spots 9774443
SRA Run Bases 1466166450
SRA Run Size 1106582694
SRA Run Id SRR019910  (Link to NCBI )
SRA Run Spots 11881027
SRA Run Bases 1782154050
SRA Run Size 1312510299
SRA Run Id SRR019909  (Link to NCBI )
SRA Run Spots 11731525
SRA Run Bases 1759728750
SRA Run Size 1245222047
SRA Run Id SRR019908  (Link to NCBI )
SRA Run Spots 4856550
SRA Run Bases 427376400
SRA Run Size 200187201
Library Name PAfwDAADWDAPE
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Layout PAIRED