SRA EXPERIMENT
SRA Experiment Id SRX007021  (Link to NCBI )
Experiment Title
SRA Study
SRA Study Id SRP000962  (Link to NCBI )
Study Title Giant panda genome sequencing project
SRA Sample
SRA Sample Id SRS004381  (Link to NCBI )
Sample Title Jingjing, a 3-year old female panda
NCBI Biosample Id SAMN00008160
Sample Description We sequenced a 3-year old female panda named Jingjing, who came from the Chengdu Research Base of Giant Panda Breeding and was chosen as the model of 2008 Olympic Mascot. The captive breeding of pandas follows principles meant to maintain genetic polymorphism, so it is difficult to find a homozygous panda because mating of close relatives is not allowed. The genetic background of Jingjing’s father comes solely from pandas in the Liangshan Mountain, and Jingjing’s mother’s genetic background has half from pandas in the Liangshan Mountain and half from the Minshan Mountain. Liangshan and Minshan are the two major locations of wild giant pandas. So Jingjing is a relatively good candidate for sequencing.
Scientific Name Ailuropoda melanoleuca
NCBI Taxonomy Id 9646
SRA Run
SRA Run Id SRR019901  (Link to NCBI )
SRA Run Spots 4978673
SRA Run Bases 438123224
SRA Run Size 196014036
   
SRA Run Id SRR019903  (Link to NCBI )
SRA Run Spots 10548177
SRA Run Bases 1582226550
SRA Run Size 1018536742
   
SRA Run Id SRR019902  (Link to NCBI )
SRA Run Spots 10419979
SRA Run Bases 1562996850
SRA Run Size 962686234
   
SRA Run Id SRR019905  (Link to NCBI )
SRA Run Spots 10457471
SRA Run Bases 1568620650
SRA Run Size 1012326289
   
SRA Run Id SRR019904  (Link to NCBI )
SRA Run Spots 9916309
SRA Run Bases 1487446350
SRA Run Size 970828959
Library Name PAfwDAADWCAPE
Library Instrument ILLUMINA_GENOME_ANALYZER_II
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Layout PAIRED