SRA EXPERIMENT
SRA Experiment Id SRX007020  (Link to NCBI )
Experiment Title
SRA Study
SRA Study Id SRP000962  (Link to NCBI )
Study Title Giant panda genome sequencing project
SRA Sample
SRA Sample Id SRS004381  (Link to NCBI )
Sample Title Jingjing, a 3-year old female panda
NCBI Biosample Id SAMN00008160
Sample Description We sequenced a 3-year old female panda named Jingjing, who came from the Chengdu Research Base of Giant Panda Breeding and was chosen as the model of 2008 Olympic Mascot. The captive breeding of pandas follows principles meant to maintain genetic polymorphism, so it is difficult to find a homozygous panda because mating of close relatives is not allowed. The genetic background of Jingjing’s father comes solely from pandas in the Liangshan Mountain, and Jingjing’s mother’s genetic background has half from pandas in the Liangshan Mountain and half from the Minshan Mountain. Liangshan and Minshan are the two major locations of wild giant pandas. So Jingjing is a relatively good candidate for sequencing.
Scientific Name Ailuropoda melanoleuca
NCBI Taxonomy Id 9646
SRA Run
SRA Run Id SRR019900  (Link to NCBI )
SRA Run Spots 10258414
SRA Run Bases 1538762100
SRA Run Size 954147900
   
SRA Run Id SRR019897  (Link to NCBI )
SRA Run Spots 9720549
SRA Run Bases 1458082350
SRA Run Size 1040165014
   
SRA Run Id SRR019896  (Link to NCBI )
SRA Run Spots 9176649
SRA Run Bases 1376497350
SRA Run Size 986368899
   
SRA Run Id SRR019899  (Link to NCBI )
SRA Run Spots 9943192
SRA Run Bases 1491478800
SRA Run Size 874907601
   
SRA Run Id SRR019898  (Link to NCBI )
SRA Run Spots 11402222
SRA Run Bases 1710333300
SRA Run Size 1203258684
   
SRA Run Id SRR019895  (Link to NCBI )
SRA Run Spots 4551859
SRA Run Bases 400563592
SRA Run Size 166565033
Library Name PAfwDAADWBAPE
Library Instrument ILLUMINA_GENOME_ANALYZER_II
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Layout PAIRED