SRA EXPERIMENT
SRA Experiment Id SRX007019  (Link to NCBI )
Experiment Title
SRA Study
SRA Study Id SRP000962  (Link to NCBI )
Study Title Giant panda genome sequencing project
SRA Sample
SRA Sample Id SRS004381  (Link to NCBI )
Sample Title Jingjing, a 3-year old female panda
NCBI Biosample Id SAMN00008160
Sample Description We sequenced a 3-year old female panda named Jingjing, who came from the Chengdu Research Base of Giant Panda Breeding and was chosen as the model of 2008 Olympic Mascot. The captive breeding of pandas follows principles meant to maintain genetic polymorphism, so it is difficult to find a homozygous panda because mating of close relatives is not allowed. The genetic background of Jingjing’s father comes solely from pandas in the Liangshan Mountain, and Jingjing’s mother’s genetic background has half from pandas in the Liangshan Mountain and half from the Minshan Mountain. Liangshan and Minshan are the two major locations of wild giant pandas. So Jingjing is a relatively good candidate for sequencing.
Scientific Name Ailuropoda melanoleuca
NCBI Taxonomy Id 9646
SRA Run
SRA Run Id SRR019889  (Link to NCBI )
SRA Run Spots 5527406
SRA Run Bases 829110900
SRA Run Size 583226620
   
SRA Run Id SRR019893  (Link to NCBI )
SRA Run Spots 3856010
SRA Run Bases 339328880
SRA Run Size 224097012
   
SRA Run Id SRR019892  (Link to NCBI )
SRA Run Spots 9955331
SRA Run Bases 1493299650
SRA Run Size 1048925257
   
SRA Run Id SRR019894  (Link to NCBI )
SRA Run Spots 10500622
SRA Run Bases 1575093300
SRA Run Size 1025053750
   
SRA Run Id SRR019891  (Link to NCBI )
SRA Run Spots 6593915
SRA Run Bases 989087250
SRA Run Size 701370185
   
SRA Run Id SRR019890  (Link to NCBI )
SRA Run Spots 6237613
SRA Run Bases 935641950
SRA Run Size 656281102
Library Name PAfwDAADWAAPE
Library Instrument ILLUMINA_GENOME_ANALYZER_II
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Layout PAIRED