SRA EXPERIMENT
SRA Experiment Id SRX007018  (Link to NCBI )
Experiment Title
SRA Study
SRA Study Id SRP000962  (Link to NCBI )
Study Title Giant panda genome sequencing project
SRA Sample
SRA Sample Id SRS004381  (Link to NCBI )
Sample Title Jingjing, a 3-year old female panda
NCBI Biosample Id SAMN00008160
Sample Description We sequenced a 3-year old female panda named Jingjing, who came from the Chengdu Research Base of Giant Panda Breeding and was chosen as the model of 2008 Olympic Mascot. The captive breeding of pandas follows principles meant to maintain genetic polymorphism, so it is difficult to find a homozygous panda because mating of close relatives is not allowed. The genetic background of Jingjing’s father comes solely from pandas in the Liangshan Mountain, and Jingjing’s mother’s genetic background has half from pandas in the Liangshan Mountain and half from the Minshan Mountain. Liangshan and Minshan are the two major locations of wild giant pandas. So Jingjing is a relatively good candidate for sequencing.
Scientific Name Ailuropoda melanoleuca
NCBI Taxonomy Id 9646
SRA Run
SRA Run Id SRR019886  (Link to NCBI )
SRA Run Spots 6941117
SRA Run Bases 1041167550
SRA Run Size 514224626
   
SRA Run Id SRR019885  (Link to NCBI )
SRA Run Spots 6817710
SRA Run Bases 1022656500
SRA Run Size 484403524
   
SRA Run Id SRR019888  (Link to NCBI )
SRA Run Spots 11558410
SRA Run Bases 1733761500
SRA Run Size 1498737996
   
SRA Run Id SRR019887  (Link to NCBI )
SRA Run Spots 10780079
SRA Run Bases 948646952
SRA Run Size 838417413
   
SRA Run Id SRR019884  (Link to NCBI )
SRA Run Spots 5587192
SRA Run Bases 838078800
SRA Run Size 698941648
Library Name PAfwDAADICAPE
Library Instrument ILLUMINA_GENOME_ANALYZER_II
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Layout PAIRED