SRA EXPERIMENT
SRA Experiment Id SRX007017  (Link to NCBI )
Experiment Title
SRA Study
SRA Study Id SRP000962  (Link to NCBI )
Study Title Giant panda genome sequencing project
SRA Sample
SRA Sample Id SRS004381  (Link to NCBI )
Sample Title Jingjing, a 3-year old female panda
NCBI Biosample Id SAMN00008160
Sample Description We sequenced a 3-year old female panda named Jingjing, who came from the Chengdu Research Base of Giant Panda Breeding and was chosen as the model of 2008 Olympic Mascot. The captive breeding of pandas follows principles meant to maintain genetic polymorphism, so it is difficult to find a homozygous panda because mating of close relatives is not allowed. The genetic background of Jingjing’s father comes solely from pandas in the Liangshan Mountain, and Jingjing’s mother’s genetic background has half from pandas in the Liangshan Mountain and half from the Minshan Mountain. Liangshan and Minshan are the two major locations of wild giant pandas. So Jingjing is a relatively good candidate for sequencing.
Scientific Name Ailuropoda melanoleuca
NCBI Taxonomy Id 9646
SRA Run
SRA Run Id SRR019879  (Link to NCBI )
SRA Run Spots 11154136
SRA Run Bases 981563968
SRA Run Size 872154483
   
SRA Run Id SRR019882  (Link to NCBI )
SRA Run Spots 10519937
SRA Run Bases 1577990550
SRA Run Size 1411145967
   
SRA Run Id SRR019881  (Link to NCBI )
SRA Run Spots 11193196
SRA Run Bases 1678979400
SRA Run Size 1503737282
   
SRA Run Id SRR019883  (Link to NCBI )
SRA Run Spots 10561659
SRA Run Bases 1584248850
SRA Run Size 1275378131
   
SRA Run Id SRR019880  (Link to NCBI )
SRA Run Spots 10051675
SRA Run Bases 1507751250
SRA Run Size 1347326759
Library Name PAfwDAADIBAPE
Library Instrument ILLUMINA_GENOME_ANALYZER_II
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Layout PAIRED