SRA Experiment Id SRX007016  (Link to NCBI )
Experiment Title
SRA Study
SRA Study Id SRP000962  (Link to NCBI )
Study Title Giant panda genome sequencing project
SRA Sample
SRA Sample Id SRS004381  (Link to NCBI )
Sample Title Jingjing, a 3-year old female panda
NCBI Biosample Id SAMN00008160
Sample Description We sequenced a 3-year old female panda named Jingjing, who came from the Chengdu Research Base of Giant Panda Breeding and was chosen as the model of 2008 Olympic Mascot. The captive breeding of pandas follows principles meant to maintain genetic polymorphism, so it is difficult to find a homozygous panda because mating of close relatives is not allowed. The genetic background of Jingjing’s father comes solely from pandas in the Liangshan Mountain, and Jingjing’s mother’s genetic background has half from pandas in the Liangshan Mountain and half from the Minshan Mountain. Liangshan and Minshan are the two major locations of wild giant pandas. So Jingjing is a relatively good candidate for sequencing.
Scientific Name Ailuropoda melanoleuca
NCBI Taxonomy Id 9646
SRA Run Id SRR019878  (Link to NCBI )
SRA Run Spots 11480765
SRA Run Bases 1722114750
SRA Run Size 1370548644
SRA Run Id SRR019875  (Link to NCBI )
SRA Run Spots 11637093
SRA Run Bases 1733926857
SRA Run Size 1529486930
SRA Run Id SRR019874  (Link to NCBI )
SRA Run Spots 6709889
SRA Run Bases 590470232
SRA Run Size 396414019
SRA Run Id SRR019877  (Link to NCBI )
SRA Run Spots 11071834
SRA Run Bases 1660775100
SRA Run Size 1284709247
SRA Run Id SRR019876  (Link to NCBI )
SRA Run Spots 10265104
SRA Run Bases 1539765600
SRA Run Size 1336149563
Library Name PAfwDAADIAAPE
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Layout PAIRED