SRA EXPERIMENT
SRA Experiment Id SRX007015  (Link to NCBI )
Experiment Title
SRA Study
SRA Study Id SRP000962  (Link to NCBI )
Study Title Giant panda genome sequencing project
SRA Sample
SRA Sample Id SRS004381  (Link to NCBI )
Sample Title Jingjing, a 3-year old female panda
NCBI Biosample Id SAMN00008160
Sample Description We sequenced a 3-year old female panda named Jingjing, who came from the Chengdu Research Base of Giant Panda Breeding and was chosen as the model of 2008 Olympic Mascot. The captive breeding of pandas follows principles meant to maintain genetic polymorphism, so it is difficult to find a homozygous panda because mating of close relatives is not allowed. The genetic background of Jingjing’s father comes solely from pandas in the Liangshan Mountain, and Jingjing’s mother’s genetic background has half from pandas in the Liangshan Mountain and half from the Minshan Mountain. Liangshan and Minshan are the two major locations of wild giant pandas. So Jingjing is a relatively good candidate for sequencing.
Scientific Name Ailuropoda melanoleuca
NCBI Taxonomy Id 9646
SRA Run
SRA Run Id SRR019871  (Link to NCBI )
SRA Run Spots 9026440
SRA Run Bases 1353966000
SRA Run Size 896514352
   
SRA Run Id SRR019870  (Link to NCBI )
SRA Run Spots 7608476
SRA Run Bases 669545888
SRA Run Size 474357742
   
SRA Run Id SRR019873  (Link to NCBI )
SRA Run Spots 9310849
SRA Run Bases 1396627350
SRA Run Size 935371787
   
SRA Run Id SRR019872  (Link to NCBI )
SRA Run Spots 11875388
SRA Run Bases 1769432812
SRA Run Size 1354965468
Library Name PAfwDADICCPE
Library Instrument ILLUMINA_GENOME_ANALYZER_II
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Layout PAIRED