SRA EXPERIMENT
SRA Experiment Id SRX007010  (Link to NCBI )
Experiment Title
SRA Study
SRA Study Id SRP000962  (Link to NCBI )
Study Title Giant panda genome sequencing project
SRA Sample
SRA Sample Id SRS004381  (Link to NCBI )
Sample Title Jingjing, a 3-year old female panda
NCBI Biosample Id SAMN00008160
Sample Description We sequenced a 3-year old female panda named Jingjing, who came from the Chengdu Research Base of Giant Panda Breeding and was chosen as the model of 2008 Olympic Mascot. The captive breeding of pandas follows principles meant to maintain genetic polymorphism, so it is difficult to find a homozygous panda because mating of close relatives is not allowed. The genetic background of Jingjing’s father comes solely from pandas in the Liangshan Mountain, and Jingjing’s mother’s genetic background has half from pandas in the Liangshan Mountain and half from the Minshan Mountain. Liangshan and Minshan are the two major locations of wild giant pandas. So Jingjing is a relatively good candidate for sequencing.
Scientific Name Ailuropoda melanoleuca
NCBI Taxonomy Id 9646
SRA Run
SRA Run Id SRR019857  (Link to NCBI )
SRA Run Spots 12646973
SRA Run Bases 1884398977
SRA Run Size 1575206173
   
SRA Run Id SRR019856  (Link to NCBI )
SRA Run Spots 4835772
SRA Run Bases 425547936
SRA Run Size 243896881
   
SRA Run Id SRR019859  (Link to NCBI )
SRA Run Spots 8435940
SRA Run Bases 1265391000
SRA Run Size 899754183
   
SRA Run Id SRR019858  (Link to NCBI )
SRA Run Spots 12560261
SRA Run Bases 1871478889
SRA Run Size 1562756656
   
SRA Run Id SRR019860  (Link to NCBI )
SRA Run Spots 7259776
SRA Run Bases 1088966400
SRA Run Size 789022530
   
SRA Run Id SRR019862  (Link to NCBI )
SRA Run Spots 7057690
SRA Run Bases 1058653500
SRA Run Size 745080807
   
SRA Run Id SRR019861  (Link to NCBI )
SRA Run Spots 7410550
SRA Run Bases 1111582500
SRA Run Size 823467572
Library Name PAfwDADHDAPE
Library Instrument ILLUMINA_GENOME_ANALYZER_II
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Layout PAIRED