SRA EXPERIMENT
SRA Experiment Id SRX007009  (Link to NCBI )
Experiment Title
SRA Study
SRA Study Id SRP000962  (Link to NCBI )
Study Title Giant panda genome sequencing project
SRA Sample
SRA Sample Id SRS004381  (Link to NCBI )
Sample Title Jingjing, a 3-year old female panda
NCBI Biosample Id SAMN00008160
Sample Description We sequenced a 3-year old female panda named Jingjing, who came from the Chengdu Research Base of Giant Panda Breeding and was chosen as the model of 2008 Olympic Mascot. The captive breeding of pandas follows principles meant to maintain genetic polymorphism, so it is difficult to find a homozygous panda because mating of close relatives is not allowed. The genetic background of Jingjing’s father comes solely from pandas in the Liangshan Mountain, and Jingjing’s mother’s genetic background has half from pandas in the Liangshan Mountain and half from the Minshan Mountain. Liangshan and Minshan are the two major locations of wild giant pandas. So Jingjing is a relatively good candidate for sequencing.
Scientific Name Ailuropoda melanoleuca
NCBI Taxonomy Id 9646
SRA Run
SRA Run Id SRR019853  (Link to NCBI )
SRA Run Spots 8068956
SRA Run Bases 1210343400
SRA Run Size 972574586
   
SRA Run Id SRR019852  (Link to NCBI )
SRA Run Spots 7653886
SRA Run Bases 1148082900
SRA Run Size 903868894
   
SRA Run Id SRR019855  (Link to NCBI )
SRA Run Spots 9018616
SRA Run Bases 1352792400
SRA Run Size 996783623
   
SRA Run Id SRR019854  (Link to NCBI )
SRA Run Spots 8206456
SRA Run Bases 1230968400
SRA Run Size 972814901
   
SRA Run Id SRR019851  (Link to NCBI )
SRA Run Spots 12493778
SRA Run Bases 1861572922
SRA Run Size 1560073551
   
SRA Run Id SRR019850  (Link to NCBI )
SRA Run Spots 5908461
SRA Run Bases 519944568
SRA Run Size 293625135
   
SRA Run Id SRR019849  (Link to NCBI )
SRA Run Spots 7834939
SRA Run Bases 689474632
SRA Run Size 569454323
Library Name PAfwDADHCAPE
Library Instrument ILLUMINA_GENOME_ANALYZER_II
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Layout PAIRED