SRA EXPERIMENT
SRA Experiment Id SRX007008  (Link to NCBI )
Experiment Title
SRA Study
SRA Study Id SRP000962  (Link to NCBI )
Study Title Giant panda genome sequencing project
SRA Sample
SRA Sample Id SRS004381  (Link to NCBI )
Sample Title Jingjing, a 3-year old female panda
NCBI Biosample Id SAMN00008160
Sample Description We sequenced a 3-year old female panda named Jingjing, who came from the Chengdu Research Base of Giant Panda Breeding and was chosen as the model of 2008 Olympic Mascot. The captive breeding of pandas follows principles meant to maintain genetic polymorphism, so it is difficult to find a homozygous panda because mating of close relatives is not allowed. The genetic background of Jingjing’s father comes solely from pandas in the Liangshan Mountain, and Jingjing’s mother’s genetic background has half from pandas in the Liangshan Mountain and half from the Minshan Mountain. Liangshan and Minshan are the two major locations of wild giant pandas. So Jingjing is a relatively good candidate for sequencing.
Scientific Name Ailuropoda melanoleuca
NCBI Taxonomy Id 9646
SRA Run
SRA Run Id SRR019846  (Link to NCBI )
SRA Run Spots 7641509
SRA Run Bases 1146226350
SRA Run Size 570051795
   
SRA Run Id SRR019845  (Link to NCBI )
SRA Run Spots 12400935
SRA Run Bases 1847739315
SRA Run Size 1603879815
   
SRA Run Id SRR019848  (Link to NCBI )
SRA Run Spots 8095286
SRA Run Bases 1214292900
SRA Run Size 651521697
   
SRA Run Id SRR019847  (Link to NCBI )
SRA Run Spots 8040655
SRA Run Bases 1206098250
SRA Run Size 659414409
   
SRA Run Id SRR019842  (Link to NCBI )
SRA Run Spots 4827313
SRA Run Bases 424803544
SRA Run Size 245824751
   
SRA Run Id SRR019841  (Link to NCBI )
SRA Run Spots 4858124
SRA Run Bases 427514912
SRA Run Size 252540729
   
SRA Run Id SRR019844  (Link to NCBI )
SRA Run Spots 2987520
SRA Run Bases 262901760
SRA Run Size 86536644
   
SRA Run Id SRR019843  (Link to NCBI )
SRA Run Spots 7351078
SRA Run Bases 1102661700
SRA Run Size 781503376
   
SRA Run Id SRR019840  (Link to NCBI )
SRA Run Spots 4006925
SRA Run Bases 352609400
SRA Run Size 204935313
Library Name PAfwDADJCAPE
Library Instrument ILLUMINA_GENOME_ANALYZER_II
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Layout PAIRED