SRA EXPERIMENT
SRA Experiment Id SRX007007  (Link to NCBI )
Experiment Title
SRA Study
SRA Study Id SRP000962  (Link to NCBI )
Study Title Giant panda genome sequencing project
SRA Sample
SRA Sample Id SRS004381  (Link to NCBI )
Sample Title Jingjing, a 3-year old female panda
NCBI Biosample Id SAMN00008160
Sample Description We sequenced a 3-year old female panda named Jingjing, who came from the Chengdu Research Base of Giant Panda Breeding and was chosen as the model of 2008 Olympic Mascot. The captive breeding of pandas follows principles meant to maintain genetic polymorphism, so it is difficult to find a homozygous panda because mating of close relatives is not allowed. The genetic background of Jingjing’s father comes solely from pandas in the Liangshan Mountain, and Jingjing’s mother’s genetic background has half from pandas in the Liangshan Mountain and half from the Minshan Mountain. Liangshan and Minshan are the two major locations of wild giant pandas. So Jingjing is a relatively good candidate for sequencing.
Scientific Name Ailuropoda melanoleuca
NCBI Taxonomy Id 9646
SRA Run
SRA Run Id SRR019835  (Link to NCBI )
SRA Run Spots 12266152
SRA Run Bases 1827656648
SRA Run Size 1530081221
   
SRA Run Id SRR019834  (Link to NCBI )
SRA Run Spots 5638489
SRA Run Bases 496187032
SRA Run Size 297745080
   
SRA Run Id SRR019837  (Link to NCBI )
SRA Run Spots 9403473
SRA Run Bases 1410520950
SRA Run Size 1066462710
   
SRA Run Id SRR019836  (Link to NCBI )
SRA Run Spots 6871976
SRA Run Bases 1030796400
SRA Run Size 727229565
   
SRA Run Id SRR019833  (Link to NCBI )
SRA Run Spots 5516413
SRA Run Bases 485444344
SRA Run Size 311276020
   
SRA Run Id SRR019832  (Link to NCBI )
SRA Run Spots 5389169
SRA Run Bases 474246872
SRA Run Size 301362745
   
SRA Run Id SRR019839  (Link to NCBI )
SRA Run Spots 8239822
SRA Run Bases 1235973300
SRA Run Size 729700548
   
SRA Run Id SRR019838  (Link to NCBI )
SRA Run Spots 7866627
SRA Run Bases 1179994050
SRA Run Size 709617552
Library Name PAfwDADFCAPE
Library Instrument ILLUMINA_GENOME_ANALYZER_II
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Layout PAIRED