SRA EXPERIMENT
SRA Experiment Id SRX007006  (Link to NCBI )
Experiment Title
SRA Study
SRA Study Id SRP000962  (Link to NCBI )
Study Title Giant panda genome sequencing project
SRA Sample
SRA Sample Id SRS004381  (Link to NCBI )
Sample Title Jingjing, a 3-year old female panda
NCBI Biosample Id SAMN00008160
Sample Description We sequenced a 3-year old female panda named Jingjing, who came from the Chengdu Research Base of Giant Panda Breeding and was chosen as the model of 2008 Olympic Mascot. The captive breeding of pandas follows principles meant to maintain genetic polymorphism, so it is difficult to find a homozygous panda because mating of close relatives is not allowed. The genetic background of Jingjing’s father comes solely from pandas in the Liangshan Mountain, and Jingjing’s mother’s genetic background has half from pandas in the Liangshan Mountain and half from the Minshan Mountain. Liangshan and Minshan are the two major locations of wild giant pandas. So Jingjing is a relatively good candidate for sequencing.
Scientific Name Ailuropoda melanoleuca
NCBI Taxonomy Id 9646
SRA Run
SRA Run Id SRR019831  (Link to NCBI )
SRA Run Spots 8187146
SRA Run Bases 720468848
SRA Run Size 577231188
   
SRA Run Id SRR019830  (Link to NCBI )
SRA Run Spots 8283681
SRA Run Bases 728963928
SRA Run Size 597362215
   
SRA Run Id SRR019828  (Link to NCBI )
SRA Run Spots 9103617
SRA Run Bases 801118296
SRA Run Size 684289707
   
SRA Run Id SRR019829  (Link to NCBI )
SRA Run Spots 7545698
SRA Run Bases 664021424
SRA Run Size 520362362
Library Name PAfwDADCEAPE
Library Instrument ILLUMINA_GENOME_ANALYZER_II
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Layout PAIRED