SRA EXPERIMENT
SRA Experiment Id SRX007005  (Link to NCBI )
Experiment Title
SRA Study
SRA Study Id SRP000962  (Link to NCBI )
Study Title Giant panda genome sequencing project
SRA Sample
SRA Sample Id SRS004381  (Link to NCBI )
Sample Title Jingjing, a 3-year old female panda
NCBI Biosample Id SAMN00008160
Sample Description We sequenced a 3-year old female panda named Jingjing, who came from the Chengdu Research Base of Giant Panda Breeding and was chosen as the model of 2008 Olympic Mascot. The captive breeding of pandas follows principles meant to maintain genetic polymorphism, so it is difficult to find a homozygous panda because mating of close relatives is not allowed. The genetic background of Jingjing’s father comes solely from pandas in the Liangshan Mountain, and Jingjing’s mother’s genetic background has half from pandas in the Liangshan Mountain and half from the Minshan Mountain. Liangshan and Minshan are the two major locations of wild giant pandas. So Jingjing is a relatively good candidate for sequencing.
Scientific Name Ailuropoda melanoleuca
NCBI Taxonomy Id 9646
SRA Run
SRA Run Id SRR019824  (Link to NCBI )
SRA Run Spots 8380077
SRA Run Bases 737446776
SRA Run Size 580905113
   
SRA Run Id SRR019823  (Link to NCBI )
SRA Run Spots 8642376
SRA Run Bases 760529088
SRA Run Size 615564447
   
SRA Run Id SRR019826  (Link to NCBI )
SRA Run Spots 8856348
SRA Run Bases 779358624
SRA Run Size 612543561
   
SRA Run Id SRR019825  (Link to NCBI )
SRA Run Spots 8632469
SRA Run Bases 759657272
SRA Run Size 607132590
   
SRA Run Id SRR019822  (Link to NCBI )
SRA Run Spots 7949249
SRA Run Bases 699533912
SRA Run Size 521284497
   
SRA Run Id SRR019827  (Link to NCBI )
SRA Run Spots 8646423
SRA Run Bases 760885224
SRA Run Size 620892704
Library Name PAfwDADCFAPE
Library Instrument ILLUMINA_GENOME_ANALYZER_II
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Layout PAIRED