SRA Experiment Id SRX007003  (Link to NCBI )
Experiment Title
SRA Study
SRA Study Id SRP000962  (Link to NCBI )
Study Title Giant panda genome sequencing project
SRA Sample
SRA Sample Id SRS004381  (Link to NCBI )
Sample Title Jingjing, a 3-year old female panda
NCBI Biosample Id SAMN00008160
Sample Description We sequenced a 3-year old female panda named Jingjing, who came from the Chengdu Research Base of Giant Panda Breeding and was chosen as the model of 2008 Olympic Mascot. The captive breeding of pandas follows principles meant to maintain genetic polymorphism, so it is difficult to find a homozygous panda because mating of close relatives is not allowed. The genetic background of Jingjing’s father comes solely from pandas in the Liangshan Mountain, and Jingjing’s mother’s genetic background has half from pandas in the Liangshan Mountain and half from the Minshan Mountain. Liangshan and Minshan are the two major locations of wild giant pandas. So Jingjing is a relatively good candidate for sequencing.
Scientific Name Ailuropoda melanoleuca
NCBI Taxonomy Id 9646
SRA Run Id SRR019820  (Link to NCBI )
SRA Run Spots 3950471
SRA Run Bases 347641448
SRA Run Size 133231827
SRA Run Id SRR019819  (Link to NCBI )
SRA Run Spots 8042960
SRA Run Bases 707780480
SRA Run Size 546344770
SRA Run Id SRR019818  (Link to NCBI )
SRA Run Spots 8177007
SRA Run Bases 719576616
SRA Run Size 569692641
Library Name PAfwDADBEAPE
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Layout PAIRED