SRA EXPERIMENT
SRA Experiment Id SRX007002  (Link to NCBI )
Experiment Title
SRA Study
SRA Study Id SRP000962  (Link to NCBI )
Study Title Giant panda genome sequencing project
SRA Sample
SRA Sample Id SRS004381  (Link to NCBI )
Sample Title Jingjing, a 3-year old female panda
NCBI Biosample Id SAMN00008160
Sample Description We sequenced a 3-year old female panda named Jingjing, who came from the Chengdu Research Base of Giant Panda Breeding and was chosen as the model of 2008 Olympic Mascot. The captive breeding of pandas follows principles meant to maintain genetic polymorphism, so it is difficult to find a homozygous panda because mating of close relatives is not allowed. The genetic background of Jingjing’s father comes solely from pandas in the Liangshan Mountain, and Jingjing’s mother’s genetic background has half from pandas in the Liangshan Mountain and half from the Minshan Mountain. Liangshan and Minshan are the two major locations of wild giant pandas. So Jingjing is a relatively good candidate for sequencing.
Scientific Name Ailuropoda melanoleuca
NCBI Taxonomy Id 9646
SRA Run
SRA Run Id SRR019813  (Link to NCBI )
SRA Run Spots 7161687
SRA Run Bases 630228456
SRA Run Size 347007736
   
SRA Run Id SRR019812  (Link to NCBI )
SRA Run Spots 3778217
SRA Run Bases 332483096
SRA Run Size 132320008
   
SRA Run Id SRR019815  (Link to NCBI )
SRA Run Spots 6545494
SRA Run Bases 576003472
SRA Run Size 334313512
   
SRA Run Id SRR019814  (Link to NCBI )
SRA Run Spots 6840839
SRA Run Bases 601993832
SRA Run Size 332059513
   
SRA Run Id SRR019817  (Link to NCBI )
SRA Run Spots 6321950
SRA Run Bases 556331600
SRA Run Size 314405185
   
SRA Run Id SRR019816  (Link to NCBI )
SRA Run Spots 6179356
SRA Run Bases 543783328
SRA Run Size 304265225
Library Name PAfwDADBFAPE
Library Instrument ILLUMINA_GENOME_ANALYZER_II
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Layout PAIRED