SRA EXPERIMENT
SRA Experiment Id SRX007000  (Link to NCBI )
Experiment Title
SRA Study
SRA Study Id SRP000962  (Link to NCBI )
Study Title Giant panda genome sequencing project
SRA Sample
SRA Sample Id SRS004381  (Link to NCBI )
Sample Title Jingjing, a 3-year old female panda
NCBI Biosample Id SAMN00008160
Sample Description We sequenced a 3-year old female panda named Jingjing, who came from the Chengdu Research Base of Giant Panda Breeding and was chosen as the model of 2008 Olympic Mascot. The captive breeding of pandas follows principles meant to maintain genetic polymorphism, so it is difficult to find a homozygous panda because mating of close relatives is not allowed. The genetic background of Jingjing’s father comes solely from pandas in the Liangshan Mountain, and Jingjing’s mother’s genetic background has half from pandas in the Liangshan Mountain and half from the Minshan Mountain. Liangshan and Minshan are the two major locations of wild giant pandas. So Jingjing is a relatively good candidate for sequencing.
Scientific Name Ailuropoda melanoleuca
NCBI Taxonomy Id 9646
SRA Run
SRA Run Id SRR019809  (Link to NCBI )
SRA Run Spots 7537455
SRA Run Bases 663296040
SRA Run Size 384255713
   
SRA Run Id SRR019806  (Link to NCBI )
SRA Run Spots 7331825
SRA Run Bases 645200600
SRA Run Size 365638867
   
SRA Run Id SRR019805  (Link to NCBI )
SRA Run Spots 6410439
SRA Run Bases 564118632
SRA Run Size 314521036
   
SRA Run Id SRR019808  (Link to NCBI )
SRA Run Spots 7360764
SRA Run Bases 647747232
SRA Run Size 365566309
   
SRA Run Id SRR019807  (Link to NCBI )
SRA Run Spots 6105342
SRA Run Bases 537270096
SRA Run Size 276778724
Library Name PAfwDADBDBPE
Library Instrument ILLUMINA_GENOME_ANALYZER_II
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Layout PAIRED