SRA EXPERIMENT
SRA Experiment Id SRX006999  (Link to NCBI )
Experiment Title
SRA Study
SRA Study Id SRP000962  (Link to NCBI )
Study Title Giant panda genome sequencing project
SRA Sample
SRA Sample Id SRS004381  (Link to NCBI )
Sample Title Jingjing, a 3-year old female panda
NCBI Biosample Id SAMN00008160
Sample Description We sequenced a 3-year old female panda named Jingjing, who came from the Chengdu Research Base of Giant Panda Breeding and was chosen as the model of 2008 Olympic Mascot. The captive breeding of pandas follows principles meant to maintain genetic polymorphism, so it is difficult to find a homozygous panda because mating of close relatives is not allowed. The genetic background of Jingjing’s father comes solely from pandas in the Liangshan Mountain, and Jingjing’s mother’s genetic background has half from pandas in the Liangshan Mountain and half from the Minshan Mountain. Liangshan and Minshan are the two major locations of wild giant pandas. So Jingjing is a relatively good candidate for sequencing.
Scientific Name Ailuropoda melanoleuca
NCBI Taxonomy Id 9646
SRA Run
SRA Run Id SRR019802  (Link to NCBI )
SRA Run Spots 4576257
SRA Run Bases 402710616
SRA Run Size 168450457
   
SRA Run Id SRR019801  (Link to NCBI )
SRA Run Spots 3235959
SRA Run Bases 284764392
SRA Run Size 91162937
   
SRA Run Id SRR019804  (Link to NCBI )
SRA Run Spots 3709688
SRA Run Bases 326452544
SRA Run Size 110158033
   
SRA Run Id SRR019803  (Link to NCBI )
SRA Run Spots 4077027
SRA Run Bases 358778376
SRA Run Size 131461069
   
SRA Run Id SRR019800  (Link to NCBI )
SRA Run Spots 6096888
SRA Run Bases 536526144
SRA Run Size 255040919
Library Name PAfwDADBGAPE
Library Instrument ILLUMINA_GENOME_ANALYZER_II
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Layout PAIRED