SRA EXPERIMENT
SRA Experiment Id SRX006998  (Link to NCBI )
Experiment Title
SRA Study
SRA Study Id SRP000962  (Link to NCBI )
Study Title Giant panda genome sequencing project
SRA Sample
SRA Sample Id SRS004381  (Link to NCBI )
Sample Title Jingjing, a 3-year old female panda
NCBI Biosample Id SAMN00008160
Sample Description We sequenced a 3-year old female panda named Jingjing, who came from the Chengdu Research Base of Giant Panda Breeding and was chosen as the model of 2008 Olympic Mascot. The captive breeding of pandas follows principles meant to maintain genetic polymorphism, so it is difficult to find a homozygous panda because mating of close relatives is not allowed. The genetic background of Jingjing’s father comes solely from pandas in the Liangshan Mountain, and Jingjing’s mother’s genetic background has half from pandas in the Liangshan Mountain and half from the Minshan Mountain. Liangshan and Minshan are the two major locations of wild giant pandas. So Jingjing is a relatively good candidate for sequencing.
Scientific Name Ailuropoda melanoleuca
NCBI Taxonomy Id 9646
SRA Run
SRA Run Id SRR019783  (Link to NCBI )
SRA Run Spots 8381379
SRA Run Bases 838137900
SRA Run Size 618262816
   
SRA Run Id SRR019794  (Link to NCBI )
SRA Run Spots 6851213
SRA Run Bases 602906744
SRA Run Size 383647826
   
SRA Run Id SRR019782  (Link to NCBI )
SRA Run Spots 8024843
SRA Run Bases 802484300
SRA Run Size 570272472
   
SRA Run Id SRR019793  (Link to NCBI )
SRA Run Spots 7674699
SRA Run Bases 675373512
SRA Run Size 398942591
   
SRA Run Id SRR019796  (Link to NCBI )
SRA Run Spots 6714478
SRA Run Bases 590874064
SRA Run Size 366918844
   
SRA Run Id SRR019785  (Link to NCBI )
SRA Run Spots 7248991
SRA Run Bases 565421298
SRA Run Size 326022811
   
SRA Run Id SRR019795  (Link to NCBI )
SRA Run Spots 6836417
SRA Run Bases 601604696
SRA Run Size 382825219
   
SRA Run Id SRR019784  (Link to NCBI )
SRA Run Spots 8292745
SRA Run Bases 829274500
SRA Run Size 626556001
   
SRA Run Id SRR019790  (Link to NCBI )
SRA Run Spots 7680320
SRA Run Bases 675868160
SRA Run Size 402200886
   
SRA Run Id SRR019792  (Link to NCBI )
SRA Run Spots 7487526
SRA Run Bases 658902288
SRA Run Size 405975008
   
SRA Run Id SRR019781  (Link to NCBI )
SRA Run Spots 8075498
SRA Run Bases 807549800
SRA Run Size 611276817
   
SRA Run Id SRR019780  (Link to NCBI )
SRA Run Spots 8125049
SRA Run Bases 812504900
SRA Run Size 585530314
   
SRA Run Id SRR019791  (Link to NCBI )
SRA Run Spots 6568084
SRA Run Bases 577991392
SRA Run Size 361987136
   
SRA Run Id SRR019779  (Link to NCBI )
SRA Run Spots 7864056
SRA Run Bases 786405600
SRA Run Size 556596268
   
SRA Run Id SRR019787  (Link to NCBI )
SRA Run Spots 6324551
SRA Run Bases 556560488
SRA Run Size 347406053
   
SRA Run Id SRR019798  (Link to NCBI )
SRA Run Spots 7940084
SRA Run Bases 698727392
SRA Run Size 445930842
   
SRA Run Id SRR019786  (Link to NCBI )
SRA Run Spots 6719621
SRA Run Bases 591326648
SRA Run Size 340109001
   
SRA Run Id SRR019797  (Link to NCBI )
SRA Run Spots 6486914
SRA Run Bases 570848432
SRA Run Size 348341106
   
SRA Run Id SRR019789  (Link to NCBI )
SRA Run Spots 7786796
SRA Run Bases 685238048
SRA Run Size 419887090
   
SRA Run Id SRR019778  (Link to NCBI )
SRA Run Spots 7795243
SRA Run Bases 779524300
SRA Run Size 547548311
   
SRA Run Id SRR019799  (Link to NCBI )
SRA Run Spots 6299038
SRA Run Bases 554315344
SRA Run Size 309850752
   
SRA Run Id SRR019788  (Link to NCBI )
SRA Run Spots 7756346
SRA Run Bases 682558448
SRA Run Size 417340707
Library Name PAfwDADCBAPE
Library Instrument ILLUMINA_GENOME_ANALYZER_II
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Layout PAIRED