SRA EXPERIMENT
SRA Experiment Id SRX006997  (Link to NCBI )
Experiment Title
SRA Study
SRA Study Id SRP000962  (Link to NCBI )
Study Title Giant panda genome sequencing project
SRA Sample
SRA Sample Id SRS004381  (Link to NCBI )
Sample Title Jingjing, a 3-year old female panda
NCBI Biosample Id SAMN00008160
Sample Description We sequenced a 3-year old female panda named Jingjing, who came from the Chengdu Research Base of Giant Panda Breeding and was chosen as the model of 2008 Olympic Mascot. The captive breeding of pandas follows principles meant to maintain genetic polymorphism, so it is difficult to find a homozygous panda because mating of close relatives is not allowed. The genetic background of Jingjing’s father comes solely from pandas in the Liangshan Mountain, and Jingjing’s mother’s genetic background has half from pandas in the Liangshan Mountain and half from the Minshan Mountain. Liangshan and Minshan are the two major locations of wild giant pandas. So Jingjing is a relatively good candidate for sequencing.
Scientific Name Ailuropoda melanoleuca
NCBI Taxonomy Id 9646
SRA Run
SRA Run Id SRR019772  (Link to NCBI )
SRA Run Spots 6746988
SRA Run Bases 593734944
SRA Run Size 329132931
   
SRA Run Id SRR019771  (Link to NCBI )
SRA Run Spots 6676082
SRA Run Bases 587495216
SRA Run Size 316973956
   
SRA Run Id SRR019774  (Link to NCBI )
SRA Run Spots 6682358
SRA Run Bases 588047504
SRA Run Size 326977857
   
SRA Run Id SRR019773  (Link to NCBI )
SRA Run Spots 6729283
SRA Run Bases 592176904
SRA Run Size 339606551
   
SRA Run Id SRR019770  (Link to NCBI )
SRA Run Spots 6062699
SRA Run Bases 533517512
SRA Run Size 272446272
   
SRA Run Id SRR019769  (Link to NCBI )
SRA Run Spots 6368110
SRA Run Bases 560393680
SRA Run Size 310099287
   
SRA Run Id SRR019768  (Link to NCBI )
SRA Run Spots 6533573
SRA Run Bases 574954424
SRA Run Size 326677711
   
SRA Run Id SRR019776  (Link to NCBI )
SRA Run Spots 6642047
SRA Run Bases 584500136
SRA Run Size 326477286
   
SRA Run Id SRR019765  (Link to NCBI )
SRA Run Spots 6128685
SRA Run Bases 539324280
SRA Run Size 286446318
   
SRA Run Id SRR019775  (Link to NCBI )
SRA Run Spots 6546119
SRA Run Bases 576058472
SRA Run Size 301386371
   
SRA Run Id SRR019767  (Link to NCBI )
SRA Run Spots 6418555
SRA Run Bases 564832840
SRA Run Size 317611778
   
SRA Run Id SRR019777  (Link to NCBI )
SRA Run Spots 3768711
SRA Run Bases 376871100
SRA Run Size 116550514
   
SRA Run Id SRR019766  (Link to NCBI )
SRA Run Spots 6322204
SRA Run Bases 556353952
SRA Run Size 300929732
Library Name PAfwDADDCAPE
Library Instrument ILLUMINA_GENOME_ANALYZER_II
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Layout PAIRED