SRA EXPERIMENT
SRA Experiment Id SRX006996  (Link to NCBI )
Experiment Title
SRA Study
SRA Study Id SRP000962  (Link to NCBI )
Study Title Giant panda genome sequencing project
SRA Sample
SRA Sample Id SRS004381  (Link to NCBI )
Sample Title Jingjing, a 3-year old female panda
NCBI Biosample Id SAMN00008160
Sample Description We sequenced a 3-year old female panda named Jingjing, who came from the Chengdu Research Base of Giant Panda Breeding and was chosen as the model of 2008 Olympic Mascot. The captive breeding of pandas follows principles meant to maintain genetic polymorphism, so it is difficult to find a homozygous panda because mating of close relatives is not allowed. The genetic background of Jingjing’s father comes solely from pandas in the Liangshan Mountain, and Jingjing’s mother’s genetic background has half from pandas in the Liangshan Mountain and half from the Minshan Mountain. Liangshan and Minshan are the two major locations of wild giant pandas. So Jingjing is a relatively good candidate for sequencing.
Scientific Name Ailuropoda melanoleuca
NCBI Taxonomy Id 9646
SRA Run
SRA Run Id SRR019759  (Link to NCBI )
SRA Run Spots 2699345
SRA Run Bases 237542360
SRA Run Size 76208954
   
SRA Run Id SRR019764  (Link to NCBI )
SRA Run Spots 5897207
SRA Run Bases 518954216
SRA Run Size 287493751
   
SRA Run Id SRR019761  (Link to NCBI )
SRA Run Spots 7204071
SRA Run Bases 633958248
SRA Run Size 350263137
   
SRA Run Id SRR019760  (Link to NCBI )
SRA Run Spots 6640402
SRA Run Bases 584355376
SRA Run Size 318108782
   
SRA Run Id SRR019763  (Link to NCBI )
SRA Run Spots 6705843
SRA Run Bases 590114184
SRA Run Size 364378565
   
SRA Run Id SRR019762  (Link to NCBI )
SRA Run Spots 7130041
SRA Run Bases 627443608
SRA Run Size 337068207
Library Name PAfwDADBDAPE
Library Instrument ILLUMINA_GENOME_ANALYZER_II
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Layout PAIRED