SRA EXPERIMENT
SRA Experiment Id SRX006995  (Link to NCBI )
Experiment Title
SRA Study
SRA Study Id SRP000962  (Link to NCBI )
Study Title Giant panda genome sequencing project
SRA Sample
SRA Sample Id SRS004381  (Link to NCBI )
Sample Title Jingjing, a 3-year old female panda
NCBI Biosample Id SAMN00008160
Sample Description We sequenced a 3-year old female panda named Jingjing, who came from the Chengdu Research Base of Giant Panda Breeding and was chosen as the model of 2008 Olympic Mascot. The captive breeding of pandas follows principles meant to maintain genetic polymorphism, so it is difficult to find a homozygous panda because mating of close relatives is not allowed. The genetic background of Jingjing’s father comes solely from pandas in the Liangshan Mountain, and Jingjing’s mother’s genetic background has half from pandas in the Liangshan Mountain and half from the Minshan Mountain. Liangshan and Minshan are the two major locations of wild giant pandas. So Jingjing is a relatively good candidate for sequencing.
Scientific Name Ailuropoda melanoleuca
NCBI Taxonomy Id 9646
SRA Run
SRA Run Id SRR019750  (Link to NCBI )
SRA Run Spots 5606754
SRA Run Bases 560675400
SRA Run Size 279933350
   
SRA Run Id SRR019741  (Link to NCBI )
SRA Run Spots 2064031
SRA Run Bases 206403100
SRA Run Size 160450273
   
SRA Run Id SRR019752  (Link to NCBI )
SRA Run Spots 6900114
SRA Run Bases 607210032
SRA Run Size 363173667
   
SRA Run Id SRR019751  (Link to NCBI )
SRA Run Spots 7097088
SRA Run Bases 553572864
SRA Run Size 315300964
   
SRA Run Id SRR019747  (Link to NCBI )
SRA Run Spots 8929098
SRA Run Bases 892909800
SRA Run Size 632580321
   
SRA Run Id SRR019758  (Link to NCBI )
SRA Run Spots 6643069
SRA Run Bases 584590072
SRA Run Size 336148189
   
SRA Run Id SRR019746  (Link to NCBI )
SRA Run Spots 8864779
SRA Run Bases 886477900
SRA Run Size 642214486
   
SRA Run Id SRR019757  (Link to NCBI )
SRA Run Spots 6735818
SRA Run Bases 592751984
SRA Run Size 345189736
   
SRA Run Id SRR019749  (Link to NCBI )
SRA Run Spots 5767628
SRA Run Bases 576762800
SRA Run Size 287427708
   
SRA Run Id SRR019748  (Link to NCBI )
SRA Run Spots 5821939
SRA Run Bases 582193900
SRA Run Size 314703763
   
SRA Run Id SRR019743  (Link to NCBI )
SRA Run Spots 8882970
SRA Run Bases 888297000
SRA Run Size 648407331
   
SRA Run Id SRR019754  (Link to NCBI )
SRA Run Spots 6406356
SRA Run Bases 563759328
SRA Run Size 330853723
   
SRA Run Id SRR019742  (Link to NCBI )
SRA Run Spots 8673863
SRA Run Bases 867386300
SRA Run Size 602345704
   
SRA Run Id SRR019753  (Link to NCBI )
SRA Run Spots 6934902
SRA Run Bases 610271376
SRA Run Size 370208851
   
SRA Run Id SRR019745  (Link to NCBI )
SRA Run Spots 8731006
SRA Run Bases 873100600
SRA Run Size 609161732
   
SRA Run Id SRR019756  (Link to NCBI )
SRA Run Spots 6593860
SRA Run Bases 580259680
SRA Run Size 339339968
   
SRA Run Id SRR019744  (Link to NCBI )
SRA Run Spots 8498213
SRA Run Bases 849821300
SRA Run Size 607933345
   
SRA Run Id SRR019755  (Link to NCBI )
SRA Run Spots 6486870
SRA Run Bases 570844560
SRA Run Size 354272998
Library Name PAfwDADCAAPE
Library Instrument ILLUMINA_GENOME_ANALYZER_II
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Layout PAIRED