SRA EXPERIMENT
SRA Experiment Id SRX006993  (Link to NCBI )
Experiment Title
SRA Study
SRA Study Id SRP000962  (Link to NCBI )
Study Title Giant panda genome sequencing project
SRA Sample
SRA Sample Id SRS004381  (Link to NCBI )
Sample Title Jingjing, a 3-year old female panda
NCBI Biosample Id SAMN00008160
Sample Description We sequenced a 3-year old female panda named Jingjing, who came from the Chengdu Research Base of Giant Panda Breeding and was chosen as the model of 2008 Olympic Mascot. The captive breeding of pandas follows principles meant to maintain genetic polymorphism, so it is difficult to find a homozygous panda because mating of close relatives is not allowed. The genetic background of Jingjing’s father comes solely from pandas in the Liangshan Mountain, and Jingjing’s mother’s genetic background has half from pandas in the Liangshan Mountain and half from the Minshan Mountain. Liangshan and Minshan are the two major locations of wild giant pandas. So Jingjing is a relatively good candidate for sequencing.
Scientific Name Ailuropoda melanoleuca
NCBI Taxonomy Id 9646
SRA Run
SRA Run Id SRR019736  (Link to NCBI )
SRA Run Spots 6174903
SRA Run Bases 543391464
SRA Run Size 253027235
   
SRA Run Id SRR019735  (Link to NCBI )
SRA Run Spots 5336580
SRA Run Bases 469619040
SRA Run Size 184218466
   
SRA Run Id SRR019738  (Link to NCBI )
SRA Run Spots 6037844
SRA Run Bases 531330272
SRA Run Size 241221591
   
SRA Run Id SRR019737  (Link to NCBI )
SRA Run Spots 6197491
SRA Run Bases 545379208
SRA Run Size 254991298
   
SRA Run Id SRR019734  (Link to NCBI )
SRA Run Spots 4429942
SRA Run Bases 389834896
SRA Run Size 145402846
   
SRA Run Id SRR019739  (Link to NCBI )
SRA Run Spots 6393560
SRA Run Bases 562633280
SRA Run Size 270398041
Library Name PAfwDADAGAPE
Library Instrument ILLUMINA_GENOME_ANALYZER_II
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Layout PAIRED