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SRA EXPERIMENT
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SRA Experiment Id
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ERX5509020
(Link to NCBI )
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Experiment Title
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Illumina HiSeq 4000 paired end sequencing
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SRA Study
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| SRA Study Id |
ERP118882
(Link to NCBI ) |
| Study Title |
Freshwater Metagenomes from European Lakes and Reservoirs (including time-series metagenomes) |
| Study Abstract |
This study describes the microbial communities of different lakes and reservoirs in Europe using high throughput metagenome sequencing. Water samples from different depths representing the epi- and hypolimnion were collected. Approximately 10L of water were pre-filtered through a plankton net (20 µm) and a 5-µm filter and then filtered onto filters with a pore size of 0.22 µm. DNA was extracted from the 0.22 µm (small, planktonic fraction) and 5 µm (large, particulate fraction) filters to obtain genomic DNA of the microbial community. The study also includes time-series metagenomes. |
| Alias |
ena-STUDY-BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO-11-12-2019-16:15:02:404-1223 |
| External Id |
BioProject=PRJEB35770 |
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SRA Sample
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| SRA Sample Id |
ERS6351408
(Link to NCBI ) |
| Title |
Freshwater metagenome from Zurich Lake, Switzerland; 5m depth,11 jul2018 |
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SRA Run
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| SRA Run Id |
ERR5863204
(Link to NCBI ) |
| Spots |
176026356 |
| Bases |
52807906800 |
| Size |
22371433410 |
| Published Date |
2021-05-11 |
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Exp Library Strategy
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WGS
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Library Source
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METAGENOMIC
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Library Selection
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RANDOM
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Library Name
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unspecified
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Library Layout
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PAIRED
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Library Instrument
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ILLUMINA_HI_SEQ_4000
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Exp. Description
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Spot Length
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