SRA EXPERIMENT
SRA Experiment Id ERX4809629  (Link to NCBI )
Experiment Title MinION sequencing
SRA Study
SRA Study Id ERP125592  (Link to NCBI )
Study Title In-depth characterization of denitrifier communities across different soil ecosystems in the tundra
Study Abstract In contrast to earlier assumptions, there is now mounting evidence for the role of tundra soils as important sources of the greenhouse gas nitrous oxide (N2O). However, the microorganisms involved in the cycling of N2O in this system remain largely uncharacterized. Since tundra soils are variable sources and sinks of N2O, we aimed at investigating differences in community structure across different soil ecosystems in the tundra. We analysed 1.4 Tb of metagenomic data from soils in northern Finland covering a range of ecosystems from dry upland soils to water-logged fens and obtained 796 manually binned and curated metagenome-assembled genomes (MAGs). We then searched for MAGs harbouring genes involved in denitrification, an important process driving N2O emissions. Communities of potential denitrifiers were dominated by microorganisms with truncated denitrification pathways (i.e., lacking one or more denitrification genes) and differed across soil ecosystems. Upland soils showed a strong N2O sink potential and were dominated by members of the Alphaproteobacteria such as Bradyrhizobium and Reyranella. Fens, which had in general net-zero N2O fluxes, had a high abundance of poorly characterized taxa affiliated with the Chloroflexota lineage Ellin6529 and the Acidobacteriota subdivision Gp23. By coupling an in-depth characterization of microbial communities with in situ measurements of N2O fluxes, our results suggest that the observed spatial patterns of N2O fluxes in the tundra are related to differences in the composition of denitrifier communities.
Alias ena-STUDY-UH-08-12-2020-09:56:28:417-28
External Id BioProject=PRJEB41762
SRA Sample
SRA Sample Id ERS5469678  (Link to NCBI )
Title tundra soil metagenome m12208
SRA Run
SRA Run Id ERR5000343  (Link to NCBI )
Spots 5123790
Bases 12660505844
Published Date 2022-06-02
Exp Library Strategy WGS
Library Source METAGENOMIC
Library Selection unspecified
Library Name unspecified
Library Layout SINGLE
Library Instrument MIN_ION
Exp. Description
Spot Length