|
SRA EXPERIMENT
|
|
SRA Experiment Id
|
ERX3762416
(Link to NCBI )
|
|
Experiment Title
|
Illumina NovaSeq 6000 paired end sequencing
|
|
SRA Study
|
| SRA Study Id |
ERP118882
(Link to NCBI ) |
| Study Title |
Freshwater Metagenomes from European Lakes and Reservoirs (including time-series metagenomes) |
| Study Abstract |
This study describes the microbial communities of different lakes and reservoirs in Europe using high throughput metagenome sequencing. Water samples from different depths representing the epi- and hypolimnion were collected. Approximately 10L of water were pre-filtered through a plankton net (20 µm) and a 5-µm filter and then filtered onto filters with a pore size of 0.22 µm. DNA was extracted from the 0.22 µm (small, planktonic fraction) and 5 µm (large, particulate fraction) filters to obtain genomic DNA of the microbial community. The study also includes time-series metagenomes. |
| Alias |
ena-STUDY-BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO-11-12-2019-16:15:02:404-1223 |
| External Id |
BioProject=PRJEB35770 |
|
|
SRA Sample
|
| SRA Sample Id |
ERS4146256
(Link to NCBI ) |
| Title |
Freshwater metagenomes from Jiricka pond, Czech Republic; 0.5m depth, 28jun2017 |
|
|
SRA Run
|
| SRA Run Id |
ERR3761236
(Link to NCBI ) |
| Spots |
120910750 |
| Bases |
36273225000 |
| Size |
10541255648 |
| Published Date |
2019-12-14 |
|
|
Exp Library Strategy
|
WGS
|
|
Library Source
|
METAGENOMIC
|
|
Library Selection
|
RANDOM
|
|
Library Name
|
Jr-28jun17_L1
|
|
Library Layout
|
PAIRED
|
|
Library Instrument
|
ILLUMINA_NOVA_SEQ_6000
|
|
Exp. Description
|
|
|
Spot Length
|
|
