SRA EXPERIMENT
SRA Experiment Id ERX3252055  (Link to NCBI )
Experiment Title Illumina HiSeq 4000 paired end sequencing
SRA Study
SRA Study Id ERP113798  (Link to NCBI )
Study Title Metagenomic sequencing of the rumen of 240 cattle from Scotland
Study Abstract Ruminants provide essential nutrition for billions of people worldwide. The rumen is a specialised stomach adapted to the breakdown of plant-derived complex polysaccharides, and collectively the rumen microbiota encode the thousands of enzymes responsible. Here we present a comprehensive analysis of over 6.5 terabytes of Illumina and Nanopore sequence data, including assembly of 4941 metagenome-assembled genomes, and several single-contig, whole-chromosome assemblies of novel rumen bacteria. We also present the largest dataset of predicted proteins from the rumen, and provide rich annotation against public datasets. Together these data will form an essential part of future studies of rumen microbiome structure and function.
Alias ena-STUDY-THE ROSLIN INSTITUTE-14-02-2019-12:46:16:595-465
External Id BioProject=PRJEB31266
SRA Sample
SRA Sample Id ERS3190295  (Link to NCBI )
Title 10676_0039
SRA Run
SRA Run Id ERR3224603  (Link to NCBI )
Spots 102298834
Bases 30689650200
Size 13588545257
Published Date 2019-03-21
Exp Library Strategy WGS
Library Source METAGENOMIC
Library Selection RANDOM
Library Name 10676_0039
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_4000
Exp. Description
Spot Length