SRA EXPERIMENT
SRA Experiment Id ERX2598163  (Link to NCBI )
Experiment Title MinION sequencing
SRA Study
SRA Study Id ERP024437  (Link to NCBI )
Study Title Unusual ecophysiology of Candidate phylum Acetothermia bacteria associated with anaerobic digesters revealed by complete genome sequencing and advanced in situ microscopy
Study Abstract Members of the candidate phylum Acetothermia are globally distributed and have been detected in diverse natural habitats as well as engineered systems. However, little is known about their physiology and ecological importance. In this study, an OTU belonging to Acetothermia was identified as one of the most abundant genus-level bacterial taxa in full-scale mesophilic anaerobic digesters at two Danish wastewater treatment plants. A closed genome was obtained by differential coverage binning of metagenomes and long Nanopore reads. Genome annotation and metabolic reconstruction revealed an anaerobic chemoheterotrophic lifestyle in which the bacterium obtain energy and carbon from the fermentation of peptides, amino acids, and simple sugars to acetate, formate and hydrogen. In contrast to previously studied Acetothermia, the genome did not encode a functional acetyl-CoA pathway required for acetogenesis. Fluorescent in situ hybridization probes targeting Acetothermia were designed and used in combination with confocal laser scanning microscopy and atomic force microscopy. This revealed an unusual morphology composed of a central rod cell with bipolar prosthecae similar to those observed in Caulobacter and Asticcacaulis. These prosthecae greatly expand the cell surface to volume ratio and allow for increased nutrient uptake, providing the bacteria with a competitive advantage under nutrient limited conditions.
Alias ena-STUDY-AALBORG UNIVERSITY-09-08-2017-09:51:27:756-1641
External Id BioProject=PRJEB22104
SRA Sample
SRA Sample Id ERS1909457  (Link to NCBI )
Title Randers-0323-nanopore
SRA Run
SRA Run Id ERR2581098  (Link to NCBI )
Spots 674338
Bases 2300729599
Size 1998155305
Published Date 2018-07-04
Exp Library Strategy WGS
Library Source METAGENOMIC
Library Selection RANDOM
Library Name unspecified
Library Layout SINGLE
Library Instrument MIN_ION
Exp. Description
Spot Length