SRA EXPERIMENT
SRA Experiment Id ERX2443607  (Link to NCBI )
Experiment Title Illumina HiSeq 2500 paired end sequencing; Metagenome (WGS) of canine fecal sample
SRA Study
SRA Study Id ERP022452  (Link to NCBI )
Study Title Similarity of the dog and human gut microbiomes in gene content and response to diet
Study Abstract Gut microbes influence their hosts, modulating the link between diet and obesity. Here we study the relationship between the gut metagenomes of dogs, humans, mice, and pigs. By building a gene catalog (containing 1,247,405 genes) we show that the dog microbiome is closer to the human microbiome than the pig or mice microbiomes in gene content. We further demonstrate the similarity of the dog microbiome to the human one with a randomized trial of two diets (high-protein/low-carbohydrate vs. lower-protein/higher-carbohydrate). Diet has a large, reproducible, effect on the microbiome, independent of dog breed or sex. Diet responses were in agreement with those observed in previous human studies, leading to the conclusion that findings in dogs may be predictive of human microbiome results. In particular, a novel finding is that overweight or obese dogs experience larger compositional shifts than lean dogs in response to a high protein diet.
Alias DogGeneCatalog2017
External Id BioProject=PRJEB20308
SRA Sample
SRA Sample Id ERS1646963  (Link to NCBI )
Title Sample_A53
SRA Run
SRA Run Id ERR2402832  (Link to NCBI )
Spots 2125697
Bases 535675644
Size 241625186
   
SRA Run Id ERR2402843  (Link to NCBI )
Spots 1799602
Bases 453499704
Size 199289014
   
SRA Run Id ERR2402822  (Link to NCBI )
Spots 1823929
Bases 459630108
Size 198348095
   
SRA Run Id ERR2402844  (Link to NCBI )
Spots 1892164
Bases 476825328
Size 209087295
   
SRA Run Id ERR2402833  (Link to NCBI )
Spots 2117479
Bases 533604708
Size 241646781
   
SRA Run Id ERR2402841  (Link to NCBI )
Spots 1871373
Bases 471585996
Size 206184478
   
SRA Run Id ERR2402830  (Link to NCBI )
Spots 2148785
Bases 541493820
Size 244550064
   
SRA Run Id ERR2402842  (Link to NCBI )
Spots 1800126
Bases 453631752
Size 197967862
   
SRA Run Id ERR2402831  (Link to NCBI )
Spots 2121944
Bases 534729888
Size 241280343
   
SRA Run Id ERR2402840  (Link to NCBI )
Spots 1798717
Bases 453276684
Size 198850803
   
SRA Run Id ERR2402829  (Link to NCBI )
Spots 1867981
Bases 470731212
Size 203328283
   
SRA Run Id ERR2402838  (Link to NCBI )
Spots 1863589
Bases 469624428
Size 203690648
   
SRA Run Id ERR2402827  (Link to NCBI )
Spots 1737431
Bases 437832612
Size 190081153
   
SRA Run Id ERR2402839  (Link to NCBI )
Spots 1809057
Bases 455882364
Size 198969993
   
SRA Run Id ERR2402828  (Link to NCBI )
Spots 1817260
Bases 457949520
Size 200076882
   
SRA Run Id ERR2402836  (Link to NCBI )
Spots 2146332
Bases 540875664
Size 244947753
   
SRA Run Id ERR2402825  (Link to NCBI )
Spots 1829383
Bases 461004516
Size 200507209
   
SRA Run Id ERR2402837  (Link to NCBI )
Spots 2172917
Bases 547575084
Size 247839975
   
SRA Run Id ERR2402826  (Link to NCBI )
Spots 1661358
Bases 418662216
Size 181778904
   
SRA Run Id ERR2402845  (Link to NCBI )
Spots 1924425
Bases 484955100
Size 211181550
   
SRA Run Id ERR2402834  (Link to NCBI )
Spots 2157842
Bases 543776184
Size 246792555
   
SRA Run Id ERR2402823  (Link to NCBI )
Spots 1790986
Bases 451328472
Size 195917111
   
SRA Run Id ERR2402824  (Link to NCBI )
Spots 1747041
Bases 440254332
Size 192644836
   
SRA Run Id ERR2402835  (Link to NCBI )
Spots 2127338
Bases 536089176
Size 243535138
Exp Library Strategy WGS
Library Source METAGENOMIC
Library Selection RANDOM
Library Name Sample_A53
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2500
Exp. Description
Spot Length