SRA EXPERIMENT
SRA Experiment Id ERX2443606  (Link to NCBI )
Experiment Title Illumina HiSeq 2500 paired end sequencing; Metagenome (WGS) of canine fecal sample
SRA Study
SRA Study Id ERP022452  (Link to NCBI )
Study Title Similarity of the dog and human gut microbiomes in gene content and response to diet
Study Abstract Gut microbes influence their hosts, modulating the link between diet and obesity. Here we study the relationship between the gut metagenomes of dogs, humans, mice, and pigs. By building a gene catalog (containing 1,247,405 genes) we show that the dog microbiome is closer to the human microbiome than the pig or mice microbiomes in gene content. We further demonstrate the similarity of the dog microbiome to the human one with a randomized trial of two diets (high-protein/low-carbohydrate vs. lower-protein/higher-carbohydrate). Diet has a large, reproducible, effect on the microbiome, independent of dog breed or sex. Diet responses were in agreement with those observed in previous human studies, leading to the conclusion that findings in dogs may be predictive of human microbiome results. In particular, a novel finding is that overweight or obese dogs experience larger compositional shifts than lean dogs in response to a high protein diet.
Alias DogGeneCatalog2017
External Id BioProject=PRJEB20308
SRA Sample
SRA Sample Id ERS1646962  (Link to NCBI )
Title Sample_A26
SRA Run
SRA Run Id ERR2402799  (Link to NCBI )
Spots 2811003
Bases 708372756
Size 291845790
   
SRA Run Id ERR2402810  (Link to NCBI )
Spots 3202258
Bases 806969016
Size 347390189
   
SRA Run Id ERR2402821  (Link to NCBI )
Spots 2882618
Bases 726419736
Size 300858706
   
SRA Run Id ERR2402811  (Link to NCBI )
Spots 3169512
Bases 798717024
Size 343657300
   
SRA Run Id ERR2402800  (Link to NCBI )
Spots 2777738
Bases 699989976
Size 291221947
   
SRA Run Id ERR2402820  (Link to NCBI )
Spots 2871532
Bases 723626064
Size 301693181
   
SRA Run Id ERR2402798  (Link to NCBI )
Spots 2810667
Bases 708288084
Size 290559122
   
SRA Run Id ERR2402807  (Link to NCBI )
Spots 3161385
Bases 796669020
Size 340777040
   
SRA Run Id ERR2402818  (Link to NCBI )
Spots 2820334
Bases 710724168
Size 294870930
   
SRA Run Id ERR2402808  (Link to NCBI )
Spots 3168211
Bases 798389172
Size 342282847
   
SRA Run Id ERR2402819  (Link to NCBI )
Spots 2787056
Bases 702338112
Size 293528113
   
SRA Run Id ERR2402805  (Link to NCBI )
Spots 2862741
Bases 721410732
Size 296256313
   
SRA Run Id ERR2402816  (Link to NCBI )
Spots 2813584
Bases 709023168
Size 295961184
   
SRA Run Id ERR2402806  (Link to NCBI )
Spots 3172466
Bases 799461432
Size 342569283
   
SRA Run Id ERR2402817  (Link to NCBI )
Spots 2862135
Bases 721258020
Size 298975792
   
SRA Run Id ERR2402803  (Link to NCBI )
Spots 2814726
Bases 709310952
Size 292963842
   
SRA Run Id ERR2402814  (Link to NCBI )
Spots 2820130
Bases 710672760
Size 293027301
   
SRA Run Id ERR2402815  (Link to NCBI )
Spots 2814029
Bases 709135308
Size 293794751
   
SRA Run Id ERR2402804  (Link to NCBI )
Spots 2847068
Bases 717461136
Size 298239384
   
SRA Run Id ERR2402801  (Link to NCBI )
Spots 2845548
Bases 717078096
Size 296098740
   
SRA Run Id ERR2402812  (Link to NCBI )
Spots 3188093
Bases 803399436
Size 345189059
   
SRA Run Id ERR2402802  (Link to NCBI )
Spots 2805632
Bases 707019264
Size 291548405
   
SRA Run Id ERR2402813  (Link to NCBI )
Spots 3209120
Bases 808698240
Size 347665463
   
SRA Run Id ERR2402809  (Link to NCBI )
Spots 3160652
Bases 796484304
Size 341704346
Exp Library Strategy WGS
Library Source METAGENOMIC
Library Selection RANDOM
Library Name Sample_A26
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2500
Exp. Description
Spot Length