SRA EXPERIMENT
SRA Experiment Id ERX2443605  (Link to NCBI )
Experiment Title Illumina HiSeq 2500 paired end sequencing; Metagenome (WGS) of canine fecal sample
SRA Study
SRA Study Id ERP022452  (Link to NCBI )
Study Title Similarity of the dog and human gut microbiomes in gene content and response to diet
Study Abstract Gut microbes influence their hosts, modulating the link between diet and obesity. Here we study the relationship between the gut metagenomes of dogs, humans, mice, and pigs. By building a gene catalog (containing 1,247,405 genes) we show that the dog microbiome is closer to the human microbiome than the pig or mice microbiomes in gene content. We further demonstrate the similarity of the dog microbiome to the human one with a randomized trial of two diets (high-protein/low-carbohydrate vs. lower-protein/higher-carbohydrate). Diet has a large, reproducible, effect on the microbiome, independent of dog breed or sex. Diet responses were in agreement with those observed in previous human studies, leading to the conclusion that findings in dogs may be predictive of human microbiome results. In particular, a novel finding is that overweight or obese dogs experience larger compositional shifts than lean dogs in response to a high protein diet.
Alias DogGeneCatalog2017
External Id BioProject=PRJEB20308
SRA Sample
SRA Sample Id ERS1646961  (Link to NCBI )
Title Sample_58
SRA Run
SRA Run Id ERR2402791  (Link to NCBI )
Spots 3830709
Bases 957677250
Size 348351321
   
SRA Run Id ERR2402780  (Link to NCBI )
Spots 3635713
Bases 908928250
Size 337357704
   
SRA Run Id ERR2402792  (Link to NCBI )
Spots 3776190
Bases 944047500
Size 342783971
   
SRA Run Id ERR2402781  (Link to NCBI )
Spots 3631404
Bases 907851000
Size 335760960
   
SRA Run Id ERR2402790  (Link to NCBI )
Spots 3885518
Bases 971379500
Size 352870080
   
SRA Run Id ERR2402777  (Link to NCBI )
Spots 3606534
Bases 901633500
Size 332496670
   
SRA Run Id ERR2402788  (Link to NCBI )
Spots 3713750
Bases 928437500
Size 341167938
   
SRA Run Id ERR2402789  (Link to NCBI )
Spots 3944242
Bases 986060500
Size 364174329
   
SRA Run Id ERR2402778  (Link to NCBI )
Spots 3599175
Bases 899793750
Size 332711357
   
SRA Run Id ERR2402797  (Link to NCBI )
Spots 3869893
Bases 967473250
Size 354918784
   
SRA Run Id ERR2402775  (Link to NCBI )
Spots 3615718
Bases 903929500
Size 336052903
   
SRA Run Id ERR2402786  (Link to NCBI )
Spots 3702772
Bases 925693000
Size 339208251
   
SRA Run Id ERR2402776  (Link to NCBI )
Spots 3579352
Bases 894838000
Size 330539040
   
SRA Run Id ERR2402787  (Link to NCBI )
Spots 3694619
Bases 923654750
Size 338508523
   
SRA Run Id ERR2402784  (Link to NCBI )
Spots 3705558
Bases 926389500
Size 339745964
   
SRA Run Id ERR2402795  (Link to NCBI )
Spots 3861191
Bases 965297750
Size 351675656
   
SRA Run Id ERR2402796  (Link to NCBI )
Spots 3830495
Bases 957623750
Size 348808597
   
SRA Run Id ERR2402774  (Link to NCBI )
Spots 3638228
Bases 909557000
Size 338126799
   
SRA Run Id ERR2402785  (Link to NCBI )
Spots 3708135
Bases 927033750
Size 338603635
   
SRA Run Id ERR2402782  (Link to NCBI )
Spots 3919210
Bases 979802500
Size 359215782
   
SRA Run Id ERR2402793  (Link to NCBI )
Spots 3851491
Bases 962872750
Size 350901512
   
SRA Run Id ERR2402783  (Link to NCBI )
Spots 3747204
Bases 936801000
Size 344924021
   
SRA Run Id ERR2402794  (Link to NCBI )
Spots 3786174
Bases 946543500
Size 344390959
   
SRA Run Id ERR2402779  (Link to NCBI )
Spots 3581963
Bases 895490750
Size 330407981
Exp Library Strategy WGS
Library Source METAGENOMIC
Library Selection RANDOM
Library Name Sample_58
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2500
Exp. Description
Spot Length