SRA EXPERIMENT
SRA Experiment Id ERX2443604  (Link to NCBI )
Experiment Title Illumina HiSeq 2500 paired end sequencing; Metagenome (WGS) of canine fecal sample
SRA Study
SRA Study Id ERP022452  (Link to NCBI )
Study Title Similarity of the dog and human gut microbiomes in gene content and response to diet
Study Abstract Gut microbes influence their hosts, modulating the link between diet and obesity. Here we study the relationship between the gut metagenomes of dogs, humans, mice, and pigs. By building a gene catalog (containing 1,247,405 genes) we show that the dog microbiome is closer to the human microbiome than the pig or mice microbiomes in gene content. We further demonstrate the similarity of the dog microbiome to the human one with a randomized trial of two diets (high-protein/low-carbohydrate vs. lower-protein/higher-carbohydrate). Diet has a large, reproducible, effect on the microbiome, independent of dog breed or sex. Diet responses were in agreement with those observed in previous human studies, leading to the conclusion that findings in dogs may be predictive of human microbiome results. In particular, a novel finding is that overweight or obese dogs experience larger compositional shifts than lean dogs in response to a high protein diet.
Alias DogGeneCatalog2017
External Id BioProject=PRJEB20308
SRA Sample
SRA Sample Id ERS1646964  (Link to NCBI )
Title Sample_17
SRA Run
SRA Run Id ERR2402770  (Link to NCBI )
Spots 2015577
Bases 503894250
Size 193865019
   
SRA Run Id ERR2402766  (Link to NCBI )
Spots 2046960
Bases 511740000
Size 196129328
   
SRA Run Id ERR2402755  (Link to NCBI )
Spots 1924213
Bases 481053250
Size 186039522
   
SRA Run Id ERR2402767  (Link to NCBI )
Spots 2031927
Bases 507981750
Size 195131141
   
SRA Run Id ERR2402756  (Link to NCBI )
Spots 1947239
Bases 486809750
Size 189342079
   
SRA Run Id ERR2402753  (Link to NCBI )
Spots 1939484
Bases 484871000
Size 187379849
   
SRA Run Id ERR2402764  (Link to NCBI )
Spots 2021111
Bases 505277750
Size 197374523
   
SRA Run Id ERR2402765  (Link to NCBI )
Spots 2102986
Bases 525746500
Size 206706634
   
SRA Run Id ERR2402754  (Link to NCBI )
Spots 1934052
Bases 483513000
Size 187335638
   
SRA Run Id ERR2402773  (Link to NCBI )
Spots 2042355
Bases 510588750
Size 197651573
   
SRA Run Id ERR2402751  (Link to NCBI )
Spots 1941310
Bases 485327500
Size 189073167
   
SRA Run Id ERR2402762  (Link to NCBI )
Spots 2035917
Bases 508979250
Size 198391440
   
SRA Run Id ERR2402752  (Link to NCBI )
Spots 1919876
Bases 479969000
Size 185933090
   
SRA Run Id ERR2402763  (Link to NCBI )
Spots 2019601
Bases 504900250
Size 196664051
   
SRA Run Id ERR2402771  (Link to NCBI )
Spots 2048826
Bases 512206500
Size 197188224
   
SRA Run Id ERR2402760  (Link to NCBI )
Spots 2023987
Bases 505996750
Size 197379934
   
SRA Run Id ERR2402772  (Link to NCBI )
Spots 2020599
Bases 505149750
Size 194327134
   
SRA Run Id ERR2402761  (Link to NCBI )
Spots 2052301
Bases 513075250
Size 199436180
   
SRA Run Id ERR2402750  (Link to NCBI )
Spots 1947298
Bases 486824500
Size 189461309
   
SRA Run Id ERR2402759  (Link to NCBI )
Spots 2027779
Bases 506944750
Size 198511127
   
SRA Run Id ERR2402757  (Link to NCBI )
Spots 1942342
Bases 485585500
Size 187888903
   
SRA Run Id ERR2402768  (Link to NCBI )
Spots 2007520
Bases 501880000
Size 192593658
   
SRA Run Id ERR2402769  (Link to NCBI )
Spots 2045359
Bases 511339750
Size 196901275
   
SRA Run Id ERR2402758  (Link to NCBI )
Spots 2095813
Bases 523953250
Size 204483334
Exp Library Strategy WGS
Library Source METAGENOMIC
Library Selection RANDOM
Library Name Sample_17
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2500
Exp. Description
Spot Length