SRA EXPERIMENT
SRA Experiment Id ERX2170930  (Link to NCBI )
Experiment Title Illumina HiSeq 2500 paired end sequencing
SRA Study
SRA Study Id ERP024437  (Link to NCBI )
Study Title Unusual ecophysiology of Candidate phylum Acetothermia bacteria associated with anaerobic digesters revealed by complete genome sequencing and advanced in situ microscopy
Study Abstract Members of the candidate phylum Acetothermia are globally distributed and have been detected in diverse natural habitats as well as engineered systems. However, little is known about their physiology and ecological importance. In this study, an OTU belonging to Acetothermia was identified as one of the most abundant genus-level bacterial taxa in full-scale mesophilic anaerobic digesters at two Danish wastewater treatment plants. A closed genome was obtained by differential coverage binning of metagenomes and long Nanopore reads. Genome annotation and metabolic reconstruction revealed an anaerobic chemoheterotrophic lifestyle in which the bacterium obtain energy and carbon from the fermentation of peptides, amino acids, and simple sugars to acetate, formate and hydrogen. In contrast to previously studied Acetothermia, the genome did not encode a functional acetyl-CoA pathway required for acetogenesis. Fluorescent in situ hybridization probes targeting Acetothermia were designed and used in combination with confocal laser scanning microscopy and atomic force microscopy. This revealed an unusual morphology composed of a central rod cell with bipolar prosthecae similar to those observed in Caulobacter and Asticcacaulis. These prosthecae greatly expand the cell surface to volume ratio and allow for increased nutrient uptake, providing the bacteria with a competitive advantage under nutrient limited conditions.
Alias ena-STUDY-AALBORG UNIVERSITY-09-08-2017-09:51:27:756-1641
External Id BioProject=PRJEB22104
SRA Sample
SRA Sample Id ERS1909454  (Link to NCBI )
Title Randers-0323B
SRA Run
SRA Run Id ERR2113686  (Link to NCBI )
Spots 9856597
Bases 4257404314
Size 2119677914
Published Date 2017-10-29
Exp Library Strategy WGS
Library Source METAGENOMIC
Library Selection RANDOM
Library Name unspecified
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2500
Exp. Description
Spot Length