SRA EXPERIMENT
SRA Experiment Id ERX1174273  (Link to NCBI )
Experiment Title Illumina HiSeq 2000 paired end sequencing
SRA Study
SRA Study Id ERP012908  (Link to NCBI )
Study Title Assembly of a 5300-year-old Helicobacter pylori genome from the intestine content of the tyrollean glacier mummy
Study Abstract The stomach bacterium Helicobacter pylori is one of the most prevalent human pathogens. It has dispersed globally with its host for the past 100,000 years leading in a distinct phylogeographic pattern in modern H. pylori populations. This phylogeography is used to deduce both recent and ancient human migrations (1, 2). Owing to the complex demographic history of Europe, different hypotheses about the origin of the extant European H. pylori population (hpEurope) exist (3, 4). Here, we present a 5,300-year-old high-coverage H. pylori genome from a European Copper Age glacier mummy. Comparative sequence analysis with contemporary H. pylori classifies the “Iceman” Helicobacter as a cagA positive vacA s1a/i1/m1 type strain, most closely resembling a strain that today is commonly found in Central and South Asia and that substantially shaped the genomes of modern European H. pylori strains.
Alias ena-STUDY-UNIVERSITY KIEL-26-10-2015-12:33:50:144-88
External Id BioProject=PRJEB11511
SRA Sample
SRA Sample Id ERS942275  (Link to NCBI )
Title Helicobacter pylori; Ötzi`s Helicobacter pylori
SRA Run
SRA Run Id ERR1094787  (Link to NCBI )
Spots 24398268
Bases 4928450136
Size 3336104188
Exp Library Strategy WGS
Library Source METAGENOMIC
Library Selection RANDOM
Library Name unspecified
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2000
Exp. Description
Spot Length