SRA EXPERIMENT
SRA Experiment Id ERX1047210  (Link to NCBI )
Experiment Title Illumina HiSeq 2000 paired end sequencing
SRA Study
SRA Study Id ERP010250  (Link to NCBI )
Study Title Regulators of Gut Motility Revealed by a Gnotobiotic Model of Diet-Microbiome Interactions Related to Travel
Study Abstract To understand how different diets, the consumers’ gut microbiota, and the enteric nervous system (ENS) interact to regulate gut motility, we developed a gnotobiotic mouse model that mimics short-term dietary changes that happen when humans are traveling to places with different culinary traditions. Studying animals transplanted with the microbiota from humans representing each cuisine and fed a sequence of diets representing those of all donors, we find that correlations between bacterial species abundances and transit times are diet dependent. However, the levels of unconjugated bile acids — reflecting microbial bile salt hydrolase activity — correlate with faster transit across diets, including a Bangladeshi diet. Mice harboring a consortium of sequenced bacterial strains from the Bangladeshi donor’s microbiota and fed a Bangladeshi diet revealed that the commonly used spice, turmeric, slows transit times. Turmeric affects gut motility via bacterial bile acid deconjugation and modulation of Ret signaling in the ENS. These results demonstrate how a single food ingredient interacts with a functional microbiota trait to regulate host physiology.
Alias ena-STUDY-Center for Genome Sciences & Systems Biology-23-04-2015-20:12:51:890-571
External Id BioProject=PRJEB9169
SRA Sample
SRA Sample Id ERS798417  (Link to NCBI )
Title hA3
SRA Run
SRA Run Id ERR970246  (Link to NCBI )
Spots 610273
Bases 113510778
Size 70417890
Published Date 2015-11-20
Exp Library Strategy WGS
Library Source METAGENOMIC
Library Selection RANDOM
Library Name hA3
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2000
Exp. Description
Spot Length