SRA EXPERIMENT
SRA Experiment Id ERX1046173  (Link to NCBI )
Experiment Title NextSeq 500 sequencing
SRA Study
SRA Study Id ERP010250  (Link to NCBI )
Study Title Regulators of Gut Motility Revealed by a Gnotobiotic Model of Diet-Microbiome Interactions Related to Travel
Study Abstract To understand how different diets, the consumers’ gut microbiota, and the enteric nervous system (ENS) interact to regulate gut motility, we developed a gnotobiotic mouse model that mimics short-term dietary changes that happen when humans are traveling to places with different culinary traditions. Studying animals transplanted with the microbiota from humans representing each cuisine and fed a sequence of diets representing those of all donors, we find that correlations between bacterial species abundances and transit times are diet dependent. However, the levels of unconjugated bile acids — reflecting microbial bile salt hydrolase activity — correlate with faster transit across diets, including a Bangladeshi diet. Mice harboring a consortium of sequenced bacterial strains from the Bangladeshi donor’s microbiota and fed a Bangladeshi diet revealed that the commonly used spice, turmeric, slows transit times. Turmeric affects gut motility via bacterial bile acid deconjugation and modulation of Ret signaling in the ENS. These results demonstrate how a single food ingredient interacts with a functional microbiota trait to regulate host physiology.
Alias ena-STUDY-Center for Genome Sciences & Systems Biology-23-04-2015-20:12:51:890-571
External Id BioProject=PRJEB9169
SRA Sample
SRA Sample Id ERS796877  (Link to NCBI )
Title Bg_sample4
SRA Run
SRA Run Id ERR969215  (Link to NCBI )
Spots 27211617
Bases 1823178339
Size 885185414
Published Date 2015-11-20
Exp Library Strategy OTHER
Library Source METAGENOMIC
Library Selection size fractionation
Library Name unspecified
Library Layout SINGLE
Library Instrument NEXT_SEQ_500
Exp. Description
Spot Length