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Study

Study Name: Genome sequencing of gastrointestitanal isolates from the Baby Biome Study

Projects

Biosamples

Organisms

Biosamples: 0 Seq. Projects: 803
STUDY INFORMATION
GOLD Study ID Gs0156097
Study Name Genome sequencing of gastrointestitanal isolates from the Baby Biome Study
Other Names
NCBI Umbrella Bioproject Name
NCBI Umbrella Bioproject Accession
SRA Studies
SRA Study Id ERP024601  (Link to NCBI )
Study Title Baby_Biome_Study_gastrointestinal_bacterial_genomes
Study Abstract The study investigates how early microbe exposure and the developing immune system influence subsequent health and developmental outcomes. Culturing efforts coupled with whole genome sequencing of the gastrointestinal bacteria can address key questions that are computationally non-trivial using shotgun metagenomics alone. This comprehensive gut microbiota-derived bacterial genome collection provides the basis to improve the taxonomic classification resolution of metagenomic analysis, and to allow subsequent in vitro and in vivo experiments on host physiology and gut colonisation process. To get a broad and comprehensive coverage of the gut microbiota, we cultivated bacterial species from human faecal samples on different selectice agar media and broth. Samples are whole-genome sequenced on Illumina X10 150bp PE. This data is part of a pre-publication release. For information on the proper use of pre-publication data shared by the Wellcome Trust Sanger Institute (including details of any publication moratoria), please see http://www.sanger.ac.uk/datasharing/
  
Legacy ER Study ID
Legacy GOLD ID
Added By JGI automated process on 2021-12-23
Last Modified By
PI Unknown
Description
Relevance
Study Information Visibility Public
Metagenomic Study No
Publication
Is GEBA
Is HMP
ECOSYSTEM CLASSIFICATION
Ecosystem
Ecosystem Category
Ecosystem Type
Ecosystem Subtype
Specific Ecosystem
Ecosystem Path ID 1
STUDY COMPOSITION
Number of Biosamples 0
Number of Organisms 803
Number of Seq Projects 803
Number of Analysis Projects 800
Number of Related Studies 0

 

 

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